DEVELOPMENT.rst
HISTORY.rst
MANIFEST.in
README.rst
ROADMAP.rst
setup.py
readtagger/__init__.py
readtagger/allow_dovetailing.py
readtagger/assemby_realignment.py
readtagger/bam_io.py
readtagger/bwa.py
readtagger/cap3.py
readtagger/cigar.py
readtagger/cluster.py
readtagger/fasta_io.py
readtagger/findcluster.py
readtagger/genotype.py
readtagger/gff_io.py
readtagger/mateoperations.py
readtagger/plot_coverage.py
readtagger/pysamtools_view.py
readtagger/readtagger.py
readtagger/tag_softclip.py
readtagger/tagcluster.py
readtagger/tags.py
readtagger/targetsiteduplication.py
readtagger/update_mapq.py
readtagger/verify.py
readtagger/write_supplementary_fastq.py
readtagger.egg-info/PKG-INFO
readtagger.egg-info/SOURCES.txt
readtagger.egg-info/dependency_links.txt
readtagger.egg-info/entry_points.txt
readtagger.egg-info/requires.txt
readtagger.egg-info/top_level.txt
readtagger/cli/__init__.py
readtagger/cli/add_matesequence.py
readtagger/cli/annotate_softclipped_reads.py
readtagger/cli/findcluster.py
readtagger/cli/plot_coverage.py
readtagger/cli/pysamtools_view_cli.py
readtagger/cli/readtagger_cli.py
readtagger/cli/update_mapq.py
readtagger/cli/write_supplementary_fastq.py