AUTHORS.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/Makefile
docs/apimain.rst
docs/authors.rst
docs/cli.rst
docs/concepts.rst
docs/conf.py
docs/contributing.rst
docs/design.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/usage.rst
docs/_build/html/_images/model_frame.png
docs/_build/html/_images/model_frame1.png
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docs/_build/html/_static/ajax-loader.gif
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docs/api/microbenthos.core.rst
docs/api/microbenthos.dataview.rst
docs/api/microbenthos.exporters.rst
docs/api/microbenthos.model.rst
docs/api/microbenthos.rst
docs/api/microbenthos.runners.rst
docs/api/microbenthos.utils.rst
docs/api/modules.rst
docs/tutorials/tutorials.rst
docs/tutorials/tut01_define/model_frame.png
docs/tutorials/tut01_define/tutorial.rst
docs/tutorials/tut02_reactions/model_frame.png
docs/tutorials/tut02_reactions/tutorial.rst
docs/tutorials/tut03_microbes/model_frame.png
docs/tutorials/tut03_microbes/tutorial.rst
microbenthos/__init__.py
microbenthos/cli.py
microbenthos.egg-info/PKG-INFO
microbenthos.egg-info/SOURCES.txt
microbenthos.egg-info/dependency_links.txt
microbenthos.egg-info/entry_points.txt
microbenthos.egg-info/not-zip-safe
microbenthos.egg-info/requires.txt
microbenthos.egg-info/top_level.txt
microbenthos/core/__init__.py
microbenthos/core/domain.py
microbenthos/core/entity.py
microbenthos/core/expression.py
microbenthos/core/irradiance.py
microbenthos/core/microbes.py
microbenthos/core/process.py
microbenthos/dataview/__init__.py
microbenthos/dataview/base.py
microbenthos/dataview/hdfstore.py
microbenthos/dataview/plotter.py
microbenthos/dataview/snapshot.py
microbenthos/exporters/__init__.py
microbenthos/exporters/_output_dir_mixin.py
microbenthos/exporters/exporter.py
microbenthos/exporters/graphic.py
microbenthos/exporters/model_data.py
microbenthos/exporters/progress.py
microbenthos/model/__init__.py
microbenthos/model/equation.py
microbenthos/model/model.py
microbenthos/model/resume.py
microbenthos/model/saver.py
microbenthos/model/simulation.py
microbenthos/runners/__init__.py
microbenthos/runners/simulate.py
microbenthos/utils/__init__.py
microbenthos/utils/create.py
microbenthos/utils/loader.py
microbenthos/utils/log.py
microbenthos/utils/snapshotters.py
microbenthos/utils/yaml_setup.py
tests/__init__.py
tests/test_cli.py
tests/test_domain.py
tests/test_entity.py
tests/test_exporter.py
tests/test_exporter_model_data.py
tests/test_exporter_progress.py
tests/test_expression.py
tests/test_irradiance.py
tests/test_microbes.py
tests/test_model.py
tests/test_model_equation.py
tests/test_process.py
tests/test_processEvent.py
tests/test_runner_simulate.py
tests/test_simulation.py
tests/test_yaml_loader.py