MANIFEST.in
README.md
setup.py
pydca/__init__.py
pydca/main.py
pydca/mfdca_main.py
pydca/plmdca_main.py
pydca.egg-info/PKG-INFO
pydca.egg-info/SOURCES.txt
pydca.egg-info/dependency_links.txt
pydca.egg-info/entry_points.txt
pydca.egg-info/requires.txt
pydca.egg-info/top_level.txt
pydca/config_dca/__init__.py
pydca/config_dca/config_log.py
pydca/contact_visualizer/__init__.py
pydca/contact_visualizer/contact_visualizer.py
pydca/dca_utilities/__init__.py
pydca/dca_utilities/dca_utilities.py
pydca/fasta_reader/__init__.py
pydca/fasta_reader/fasta_reader.py
pydca/meanfield_dca/__init__.py
pydca/meanfield_dca/meanfield_dca.py
pydca/meanfield_dca/msa_numerics.py
pydca/msa_trimmer/__init__.py
pydca/msa_trimmer/msa_trimmer.py
pydca/plmdca/__init__.py
pydca/plmdca/msa_numerics.py
pydca/plmdca/plmdca.py
pydca/plmdca/plmdcaBackend.cpp
pydca/plmdca/plmdca_numerics.cpp
pydca/plmdca/include/plmdca.h
pydca/plmdca/lbfgs/include/arithmetic_ansi.h
pydca/plmdca/lbfgs/include/arithmetic_sse_double.h
pydca/plmdca/lbfgs/include/arithmetic_sse_float.h
pydca/plmdca/lbfgs/include/lbfgs.h
pydca/plmdca/lbfgs/lib/lbfgs.cpp
pydca/sequence_backmapper/__init__.py
pydca/sequence_backmapper/scoring_matrix.py
pydca/sequence_backmapper/sequence_backmapper.py