Metadata-Version: 1.1
Name: sixgill
Version: 0.1.3
Summary: six-frame genome-inferred libraries for LC-MS/MS
Home-page: UNKNOWN
Author: Damon May
Author-email: damonmay@uw.edu
License: Apache
Description: .. figure:: http://noble.gs.washington.edu/proj/metapeptide/images/sixgill_logo.png
           :alt: 
        
        Sixgill
        =======
        
        Six-frame Genome-Inferred Libraries for LC-MS/MS
        
        What is Sixgill?
        ----------------
        
        Sixgill is a tool for using shotgun metagenomics sequencing reads to
        construct databases of 'metapeptides': short protein fragments for
        database search of LC-MS/MS metaproteomics data. A comprehensive set of
        resources for building and using metapeptide databases is
        `here <http://noble.gs.washington.edu/proj/metapeptide/>`__.
        
        Required Python versions
        ------------------------
        
        Sixgill supports Python 2.7
        
        Project dependencies
        --------------------
        
        Sixgill uses the following python packages:
        
        -  `biopython <http://biopython.org>`__
        -  `pysam <https://code.google.com/archive/p/pysam/>`__
        
        Installation
        ------------
        
        -  `Get pip <https://pip.pypa.io/en/stable/installing/>`__, if you don’t
           have it yet.
        
        -  Install Sixgill and its dependencies:
        
           pip install biopython pysam sixgill
        
        Documentation
        -------------
        
        The `Sixgill wiki <https://github.com/dhmay/sixgill/wiki>`__ contains
        more detailed information on using Sixgill.
        
Keywords: proteomics metaproteomics metagenomics
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
