Copying.md
MANIFEST.in
Readme.md
pyproject.toml
requirements.txt
requirements_all.txt
requirements_appenders.txt
requirements_bioutils.txt
requirements_mlutils.txt
requirements_ysjs.txt
requirements_ysjsd.txt
setup.py
src/labw_utils/__init__.py
src/labw_utils/__main__.py
src/labw_utils/bench.py
src/labw_utils/typing_importer.py
src/labw_utils.egg-info/PKG-INFO
src/labw_utils.egg-info/SOURCES.txt
src/labw_utils.egg-info/dependency_links.txt
src/labw_utils.egg-info/requires.txt
src/labw_utils.egg-info/top_level.txt
src/labw_utils/bioutils/__init__.py
src/labw_utils/bioutils/__main__.py
src/labw_utils/bioutils/accession_matcher.py
src/labw_utils/bioutils/comm_frontend_opts.py
src/labw_utils/bioutils/_main/__init__.py
src/labw_utils/bioutils/_main/describe_fasta_by_binning.py
src/labw_utils/bioutils/_main/describe_fastq.py
src/labw_utils/bioutils/_main/describe_gtf.py
src/labw_utils/bioutils/_main/describe_gtf_by_binning.py
src/labw_utils/bioutils/_main/filter_gtf_by_attribute.py
src/labw_utils/bioutils/_main/generate_fake_fasta.py
src/labw_utils/bioutils/_main/get_exonic_depth.py
src/labw_utils/bioutils/_main/normalize_gtf.py
src/labw_utils/bioutils/_main/sample_transcript.py
src/labw_utils/bioutils/_main/split_fasta.py
src/labw_utils/bioutils/_main/transcribe.py
src/labw_utils/bioutils/algorithm/__init__.py
src/labw_utils/bioutils/algorithm/alignment.py
src/labw_utils/bioutils/algorithm/sequence.py
src/labw_utils/bioutils/algorithm/utils.py
src/labw_utils/bioutils/datastructure/__init__.py
src/labw_utils/bioutils/datastructure/fai_view.py
src/labw_utils/bioutils/datastructure/fasta_view.py
src/labw_utils/bioutils/datastructure/fastq_view.py
src/labw_utils/bioutils/datastructure/feature_view.py
src/labw_utils/bioutils/datastructure/gene_tree.py
src/labw_utils/bioutils/datastructure/gene_tree_helper.py
src/labw_utils/bioutils/datastructure/quantification_optimized_gene_tree.py
src/labw_utils/bioutils/datastructure/region_indexer.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/__init__.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/_determine_filetype.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/_gv_errors.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/_gv_feature_proxy_mutator.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/gene_view.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/gv_feature_proxy.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/gv_helper.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/old_feature_parser.py
src/labw_utils/bioutils/datastructure/gene_view_v0_1_x/old_feature_record.py
src/labw_utils/bioutils/datastructure/gv/__init__.py
src/labw_utils/bioutils/datastructure/gv/exon.py
src/labw_utils/bioutils/datastructure/gv/feature_proxy.py
src/labw_utils/bioutils/datastructure/gv/gene.py
src/labw_utils/bioutils/datastructure/gv/gene_container_interface.py
src/labw_utils/bioutils/datastructure/gv/transcript.py
src/labw_utils/bioutils/datastructure/gv/transcript_container_interface.py
src/labw_utils/bioutils/parser/__init__.py
src/labw_utils/bioutils/parser/fai.py
src/labw_utils/bioutils/parser/fasta.py
src/labw_utils/bioutils/parser/fastq.py
src/labw_utils/bioutils/parser/gtf.py
src/labw_utils/bioutils/record/__init__.py
src/labw_utils/bioutils/record/fai.py
src/labw_utils/bioutils/record/fasta.py
src/labw_utils/bioutils/record/fastq.py
src/labw_utils/bioutils/record/feature.py
src/labw_utils/bioutils/record/gtf.py
src/labw_utils/commonutils/__init__.py
src/labw_utils/commonutils/libfrontend.py
src/labw_utils/commonutils/str_utils.py
src/labw_utils/commonutils/appender/__init__.py
src/labw_utils/commonutils/appender/_base_dict_buffer_appender.py
src/labw_utils/commonutils/appender/_base_pandas_dict_table_appender.py
src/labw_utils/commonutils/appender/_dumb_appender.py
src/labw_utils/commonutils/appender/_hdf5_appender.py
src/labw_utils/commonutils/appender/_lz77tsv_appender.py
src/labw_utils/commonutils/appender/_lzmatsv_appender.py
src/labw_utils/commonutils/appender/_parquet_appender.py
src/labw_utils/commonutils/appender/_sqlite3_appender.py
src/labw_utils/commonutils/appender/_tsv_appender.py
src/labw_utils/commonutils/importer/__init__.py
src/labw_utils/commonutils/importer/_silent_tqdm.py
src/labw_utils/commonutils/importer/tqdm_importer.py
src/labw_utils/commonutils/lwio/__init__.py
src/labw_utils/commonutils/lwio/file_system.py
src/labw_utils/commonutils/lwio/safe_io.py
src/labw_utils/commonutils/lwio/tqdm_reader.py
src/labw_utils/commonutils/lwio/parallel_compressor/__init__.py
src/labw_utils/commonutils/serializer/__init__.py
src/labw_utils/commonutils/serializer/toml.py
src/labw_utils/commonutils/stdlib_helper/__init__.py
src/labw_utils/commonutils/stdlib_helper/argparse_helper.py
src/labw_utils/commonutils/stdlib_helper/itertools_helper.py
src/labw_utils/commonutils/stdlib_helper/logger_helper.py
src/labw_utils/commonutils/stdlib_helper/parallel_helper.py
src/labw_utils/commonutils/stdlib_helper/pickle_helper.py
src/labw_utils/commonutils/stdlib_helper/shutil_helper.py
src/labw_utils/commonutils/stdlib_helper/sys_helper.py
src/labw_utils/commonutils/stdlib_helper/tty_helper.py
src/labw_utils/devutils/__init__.py
src/labw_utils/devutils/decorators.py
src/labw_utils/devutils/myst_nb_helper.py
src/labw_utils/mlutils/__init__.py
src/labw_utils/mlutils/io_helper.py
src/labw_utils/mlutils/ndarray_helper.py
src/labw_utils/mlutils/torch_layers.py
src/labw_utils/stdlib/__init__.py
src/labw_utils/stdlib/cpy310/__init__.py
src/labw_utils/stdlib/cpy310/pkgutil.py
src/labw_utils/stdlib/cpy311/__init__.py
src/labw_utils/stdlib/cpy311/tomllib/__init__.py
src/labw_utils/stdlib/cpy311/tomllib/_parser.py
src/labw_utils/stdlib/cpy311/tomllib/_re.py
src/labw_utils/stdlib/cpy311/tomllib/_types.py
src/libysjs/__init__.py
src/libysjs/operation.py
src/libysjs/utils.py
src/libysjs/ds/__init__.py
src/libysjs/ds/ysjs_job.py
src/libysjs/ds/ysjs_submission.py
src/libysjs/ds/ysjsd_config.py
src/libysjs/ds/ysjsd_status.py
src/ysjs/__init__.py
src/ysjs/__main__.py
src/ysjs/_main/__init__.py
src/ysjs/_main/kill.py
src/ysjs/_main/restart.py
src/ysjs/_main/status.py
src/ysjs/_main/stop.py
src/ysjs/_main/submit.py
src/ysjsd/__init__.py
src/ysjsd/__main__.py
src/ysjsd/operation.py
src/ysjsd/server.py
src/ysjsd/ds/__init__.py
src/ysjsd/ds/ysjs_job.py
src/ysjsd/ds/ysjsd_config.py
src/ysjsd/orm/__init__.py
src/ysjsd/orm/ysjs_job_table.py
src/ysjsd/orm/ysjs_submission_table.py
src/ysjsd/orm/ysjsd_config_table.py
src/ysjsd/orm/ysjsd_version_table.py
src/ysjsd/templates/.gitignore
src/ysjsd/templates/frontpage.html