Metadata-Version: 1.1
Name: galaxy-sequence-utils
Version: 1.1.4
Summary: Galaxy utilities for manipulating sequences Galaxy project.
Home-page: https://github.com/galaxyproject/sequence_utils
Author: Dan Blankenberg, Galaxy Project and Community
Author-email: galaxy-dev@lists.galaxyproject.org
License: AFL
Description: Galaxy sequence_utils
        ----------------------
        
        .. image:: https://badge.fury.io/py/galaxy_sequence_utils.svg
           :target: https://pypi.org/project/galaxy_sequence_utils/
           :alt: Planemo on the Python Package Index (PyPI)
        
        .. image:: https://travis-ci.org/galaxyproject/sequence_utils.png?branch=master
           :target: https://travis-ci.org/galaxyproject/sequence_utils
           :alt: Build Status
        
        Galaxy's sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.
        
        This package is distributed via PyPI and bioconda.
        
        A Galaxy tool can use it by adding a requirement for `galaxy_sequence_utils`.
        
        
        
        
        History
        -------
        
        .. to_doc
        
        ---------------------
        1.1.4 (2020-02-07)
        ---------------------
        
        * Drop support for Python < 3.5
          `Pull Request 24`_, `Pull Request 25`_
        * Prevent ``StopIteration`` from raising ``RuntimeError``
          `Pull Request 20`_
        * Add ``fastqReader`` tests+test data; refactor; modify
          `Pull Request 22`_
        * Fix inconsistent identifier option for ``fastq_groomer``
          `Pull Request 23`_
        
        ---------------------
        1.1.3 (2018-07-06)
        ---------------------
        
        * Cope with default ``format=None`` in ``fastaWriter`` and ``fastqWriter``
          `Pull Request 16`_
        
        ---------------------
        1.1.2 (2017-10-05)
        ---------------------
        
        * Do not open compressed file twice in ``fastqNamedReader`` class
          `Pull Request 15`_
        
        ---------------------
        1.1.1 (2017-09-19)
        ---------------------
        
        * Fix fastq_filter.py , fastq_masker_by_quality.py , fastq_stats.py and
          fastq_to_fasta.py wrapper scripts
          `Pull Request 14`_
        * Fix fastq_filter.py wrapper script
          `Pull Request 13`_
        
        ---------------------
        1.1.0 (2017-02-13)
        ---------------------
        
        * Support gz and bzip2 compressed files.
          `Pull Request 11`_
        * Move wrapper scripts for Galaxy tools into this project and install as part of
          setup.py .
          `Pull Request 11`_
        
        ---------------------
        1.0.2 (2017-02-02)
        ---------------------
        
        * Apply common galaxyproject template to Python structure. 5e9bfc0_
        * Merge in PEP-8 and Python 3 fixes from the core Galaxy project thanks to
          @nsoranzo.
          `Pull Request 4`_
        * Implement project testings. a9b907c_
        * First release published to PyPI.
        
        ---------------------
        1.0.1 (2015-12-10)
        ---------------------
        
        * Allow fastqJoiner to accept a string of bases to use between joined pairs.
          `Pull Request 2`_
        
        ---------------------
        1.0.0 (2015-10-30)
        ---------------------
        
        * Initial import extracted from Galaxy to build stand-alone dependencies for the
          tools in the Tool Shed.
        * Use setuptools
          `Pull Request 1`_
        
        .. github_links
        .. _a9b907c: https://github.com/galaxyproject/sequence_utils/commit/a9b907c
        .. _c68932a: https://github.com/galaxyproject/sequence_utils/commit/c68932a
        .. _5e9bfc0: https://github.com/galaxyproject/sequence_utils/commit/5e9bfc0
        .. _Pull Request 1: https://github.com/galaxyproject/sequence_utils/pull/1
        .. _Pull Request 2: https://github.com/galaxyproject/sequence_utils/pull/2
        .. _Pull Request 4: https://github.com/galaxyproject/sequence_utils/pull/4
        .. _Pull Request 11: https://github.com/galaxyproject/sequence_utils/pull/11
        .. _Pull Request 13: https://github.com/galaxyproject/sequence_utils/pull/13
        .. _Pull Request 14: https://github.com/galaxyproject/sequence_utils/pull/14
        .. _Pull Request 15: https://github.com/galaxyproject/sequence_utils/pull/15
        .. _Pull Request 16: https://github.com/galaxyproject/sequence_utils/pull/16
        .. _Pull Request 20: https://github.com/galaxyproject/sequence_utils/pull/20
        .. _Pull Request 22: https://github.com/galaxyproject/sequence_utils/pull/22
        .. _Pull Request 23: https://github.com/galaxyproject/sequence_utils/pull/23
        .. _Pull Request 24: https://github.com/galaxyproject/sequence_utils/pull/24
        .. _Pull Request 25: https://github.com/galaxyproject/sequence_utils/pull/25
        
Keywords: planemo
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: Academic Free License (AFL)
Classifier: Operating System :: POSIX
Classifier: Topic :: Software Development
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
