LICENSE.md
MANIFEST.in
README.md
VERSION
setup.cfg
setup.py
src/pytpp/__init__.py
src/pytpp/__main__.py
src/pytpp/tpp_gui.py
src/pytpp/tpp_tools.py
src/pytransit/__init__.py
src/pytransit/__main__.py
src/pytransit/draw_trash.py
src/pytransit/fileDisplay.py
src/pytransit/images.py
src/pytransit/norm_tools.py
src/pytransit/qcDisplay.py
src/pytransit/stat_tools.py
src/pytransit/tnseq_tools.py
src/pytransit/transit_gui.py
src/pytransit/transit_tools.py
src/pytransit/trash.py
src/pytransit/view_trash.py
src/pytransit/analysis/__init__.py
src/pytransit/analysis/base.py
src/pytransit/analysis/binomial.py
src/pytransit/analysis/example.py
src/pytransit/analysis/griffin.py
src/pytransit/analysis/gumbel.py
src/pytransit/analysis/hmm.py
src/pytransit/analysis/rankproduct.py
src/pytransit/analysis/resampling.py
src/pytransit/analysis/tn5gaps.py
src/pytransit/data/cholesterol_H37Rv_merged.wig
src/pytransit/data/cholesterol_H37Rv_rep1.wig
src/pytransit/data/cholesterol_H37Rv_rep2.wig
src/pytransit/data/cholesterol_H37Rv_rep3.wig
src/pytransit/data/glycerol_H37Rv_merged.wig
src/pytransit/data/glycerol_H37Rv_rep1.wig
src/pytransit/data/glycerol_H37Rv_rep2.wig
src/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat
src/pytransit/data/hmm_glycerol_sites.dat
src/pytransit/data/hmm_glycerol_sites_genes.dat
src/pytransit/data/resampling_output.dat
src/pytransit/data/resampling_results_glyc_chol.dat
src/pytransit/doc/build/html/genindex.html
src/pytransit/doc/build/html/index.html
src/pytransit/doc/build/html/py-modindex.html
src/pytransit/doc/build/html/pytransit.analysis.html
src/pytransit/doc/build/html/pytransit.html
src/pytransit/doc/build/html/runtransit.html
src/pytransit/doc/build/html/search.html
src/pytransit/doc/build/html/tpp.html
src/pytransit/doc/build/html/transit.html
src/pytransit/doc/build/html/transit_code.html
src/pytransit/doc/build/html/transit_comparative_tutorial.html
src/pytransit/doc/build/html/transit_essentiality_tutorial.html
src/pytransit/doc/build/html/transit_export_tutorial.html
src/pytransit/doc/build/html/transit_genome_tutorial.html
src/pytransit/doc/build/html/transit_install.html
src/pytransit/doc/build/html/transit_methods.html
src/pytransit/doc/build/html/transit_overview.html
src/pytransit/doc/build/html/transit_running.html
src/pytransit/doc/build/html/view_qc.html
src/pytransit/doc/build/html/_images/TPP-screenshot.png
src/pytransit/doc/build/html/_images/transit_dataset_scatter_graph.png
src/pytransit/doc/build/html/_images/transit_dataset_track_view.png
src/pytransit/doc/build/html/_images/transit_export_options.png
src/pytransit/doc/build/html/_images/transit_gumbel_options.png
src/pytransit/doc/build/html/_images/transit_hmm_options.png
src/pytransit/doc/build/html/_images/transit_interface.png
src/pytransit/doc/build/html/_images/transit_resampling_histogram_graph.png
src/pytransit/doc/build/html/_images/transit_resampling_options.png
src/pytransit/doc/build/html/_images/transit_resampling_results.png
src/pytransit/doc/build/html/_images/transit_result_volcano_graph.png
src/pytransit/doc/build/html/_images/transit_tutorial_annotation.png
src/pytransit/doc/build/html/_images/transit_tutorial_control_datasets.png
src/pytransit/doc/build/html/_images/transit_tutorial_experimental_datasets.png
src/pytransit/doc/build/html/_modules/functools.html
src/pytransit/doc/build/html/_modules/index.html
src/pytransit/doc/build/html/_modules/runtransit.html
src/pytransit/doc/build/html/_modules/view_qc.html
src/pytransit/doc/build/html/_modules/pytransit/draw_trash.html
src/pytransit/doc/build/html/_modules/pytransit/fileDisplay.html
src/pytransit/doc/build/html/_modules/pytransit/norm_tools.html
src/pytransit/doc/build/html/_modules/pytransit/qcDisplay.html
src/pytransit/doc/build/html/_modules/pytransit/stat_tools.html
src/pytransit/doc/build/html/_modules/pytransit/tnseq_tools.html
src/pytransit/doc/build/html/_modules/pytransit/transit_gui.html
src/pytransit/doc/build/html/_modules/pytransit/transit_tools.html
src/pytransit/doc/build/html/_modules/pytransit/trash.html
src/pytransit/doc/build/html/_modules/pytransit/view_trash.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/base.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/binomial.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/example.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/griffin.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/gumbel.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/hmm.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/rankproduct.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/resampling.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/tn5gaps.html
src/pytransit/doc/build/html/_static/ajax-loader.gif
src/pytransit/doc/build/html/_static/basic.css
src/pytransit/doc/build/html/_static/comment-bright.png
src/pytransit/doc/build/html/_static/comment-close.png
src/pytransit/doc/build/html/_static/comment.png
src/pytransit/doc/build/html/_static/doctools.js
src/pytransit/doc/build/html/_static/down-pressed.png
src/pytransit/doc/build/html/_static/down.png
src/pytransit/doc/build/html/_static/file.png
src/pytransit/doc/build/html/_static/jquery-1.11.1.js
src/pytransit/doc/build/html/_static/jquery.js
src/pytransit/doc/build/html/_static/minus.png
src/pytransit/doc/build/html/_static/plus.png
src/pytransit/doc/build/html/_static/pygments.css
src/pytransit/doc/build/html/_static/searchtools.js
src/pytransit/doc/build/html/_static/transit_logo.png
src/pytransit/doc/build/html/_static/underscore-1.3.1.js
src/pytransit/doc/build/html/_static/underscore.js
src/pytransit/doc/build/html/_static/up-pressed.png
src/pytransit/doc/build/html/_static/up.png
src/pytransit/doc/build/html/_static/websupport.js
src/pytransit/doc/build/html/_static/css/badge_only.css
src/pytransit/doc/build/html/_static/css/theme.css
src/pytransit/doc/build/html/_static/fonts/Inconsolata-Bold.ttf
src/pytransit/doc/build/html/_static/fonts/Inconsolata-Regular.ttf
src/pytransit/doc/build/html/_static/fonts/Lato-Bold.ttf
src/pytransit/doc/build/html/_static/fonts/Lato-Regular.ttf
src/pytransit/doc/build/html/_static/fonts/RobotoSlab-Bold.ttf
src/pytransit/doc/build/html/_static/fonts/RobotoSlab-Regular.ttf
src/pytransit/doc/build/html/_static/fonts/fontawesome-webfont.eot
src/pytransit/doc/build/html/_static/fonts/fontawesome-webfont.svg
src/pytransit/doc/build/html/_static/fonts/fontawesome-webfont.ttf
src/pytransit/doc/build/html/_static/fonts/fontawesome-webfont.woff
src/pytransit/doc/build/html/_static/js/modernizr.min.js
src/pytransit/doc/build/html/_static/js/theme.js
src/pytransit/genomes/BCG.fna
src/pytransit/genomes/BCG.prot_table
src/pytransit/genomes/H37Rv.fna
src/pytransit/genomes/H37Rv.prot_table
src/pytransit/genomes/H37RvBD.fna
src/pytransit/genomes/H37RvBD.prot_table
src/pytransit/genomes/H37RvBD_mod3.prot_table
src/pytransit/genomes/H37RvMA2.fna
src/pytransit/genomes/H37RvMA2.prot_table
src/pytransit/genomes/genomes.html
src/pytransit/genomes/genomes.html~
src/pytransit/genomes/mc2_155_tamu.fna
src/pytransit/genomes/mc2_155_tamu.prot_table
tnseq_transit.egg-info/PKG-INFO
tnseq_transit.egg-info/SOURCES.txt
tnseq_transit.egg-info/dependency_links.txt
tnseq_transit.egg-info/entry_points.txt
tnseq_transit.egg-info/requires.txt
tnseq_transit.egg-info/top_level.txt