LICENSE
MANIFEST.in
README.md
setup.py
mutacc/__init__.py
mutacc.egg-info/PKG-INFO
mutacc.egg-info/SOURCES.txt
mutacc.egg-info/dependency_links.txt
mutacc.egg-info/entry_points.txt
mutacc.egg-info/requires.txt
mutacc.egg-info/top_level.txt
mutacc/builds/__init__.py
mutacc/builds/build_case.py
mutacc/builds/build_dataset.py
mutacc/builds/build_sample.py
mutacc/builds/build_variant.py
mutacc/builds/build_version.py
mutacc/cli/__init__.py
mutacc/cli/constants.py
mutacc/cli/database.py
mutacc/cli/export.py
mutacc/cli/extract.py
mutacc/cli/importing.py
mutacc/cli/remove_command.py
mutacc/cli/root.py
mutacc/cli/synthesize.py
mutacc/cli/version_command.py
mutacc/cli/view_command.py
mutacc/mutaccDB/__init__.py
mutacc/mutaccDB/db_adapter.py
mutacc/mutaccDB/insert.py
mutacc/mutaccDB/query.py
mutacc/mutaccDB/remove_case.py
mutacc/parse/__init__.py
mutacc/parse/parse_ped.py
mutacc/parse/path_parse.py
mutacc/parse/yaml_parse.py
mutacc/resources/__init__.py
mutacc/resources/case.yaml
mutacc/resources/child.bam
mutacc/resources/child.bam.bai
mutacc/resources/child_R1.fastq.gz
mutacc/resources/child_R2.fastq.gz
mutacc/resources/father.bam
mutacc/resources/father.bam.bai
mutacc/resources/father_R1.fastq.gz
mutacc/resources/father_R2.fastq.gz
mutacc/resources/mother.bam
mutacc/resources/mother.bam.bai
mutacc/resources/mother_R1.fastq.gz
mutacc/resources/mother_R2.fastq.gz
mutacc/resources/variant1.vcf.gz
mutacc/resources/variant1.vcf.gz.tbi
mutacc/resources/vcf-info-def.yaml
mutacc/subprocessing/__init__.py
mutacc/subprocessing/bam_to_fastq.py
mutacc/subprocessing/exclude_from_fastq.py
mutacc/subprocessing/get_md5.py
mutacc/subprocessing/merge_fastqs.py
mutacc/utils/__init__.py
mutacc/utils/bam_handler.py
mutacc/utils/constants.py
mutacc/utils/fastq_handler.py
mutacc/utils/pedigree.py
mutacc/utils/region_handler.py
mutacc/utils/sort_variants.py
mutacc/utils/vcf_handler.py
tests/__init__.py
tests/conftest.py
tests/random_case.py
tests/utils/__init__.py
tests/utils/test_bam_handler.py
tests/utils/test_fastq_handler.py
tests/utils/test_pedigree.py
tests/utils/test_region_handler.py
tests/utils/test_sort_variants.py
tests/utils/test_vcf_handler.py