.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
README.md
codecov.yml
environment.yml
pyproject.toml
setup.cfg
setup.py
.github/workflows/black.yml
.github/workflows/publish.yml
.github/workflows/tests.yml
docs/Makefile
docs/make.bat
docs/src/annot_fmt.png
docs/src/annotating.md
docs/src/api.md
docs/src/conf.py
docs/src/contact.md
docs/src/index.md
docs/src/install.md
docs/src/ion_types.png
docs/src/iplot_mirror.json
docs/src/iplot_spectrum.json
docs/src/mirror.png
docs/src/neutral_losses_1.png
docs/src/neutral_losses_2.png
docs/src/plotting.md
docs/src/proforma_ast.png
docs/src/proforma_ex1.png
docs/src/proforma_ex2.png
docs/src/proforma_ex3.png
docs/src/quickstart.md
docs/src/quickstart.png
docs/src/runtime.md
docs/src/runtime.png
spectrum_utils/__init__.py
spectrum_utils/fragment_annotation.py
spectrum_utils/iplot.py
spectrum_utils/monosaccharide.lark
spectrum_utils/plot.py
spectrum_utils/proforma.ebnf
spectrum_utils/proforma.py
spectrum_utils/spectrum.py
spectrum_utils/utils.py
spectrum_utils.egg-info/PKG-INFO
spectrum_utils.egg-info/SOURCES.txt
spectrum_utils.egg-info/dependency_links.txt
spectrum_utils.egg-info/requires.txt
spectrum_utils.egg-info/top_level.txt
tests/__init__.py
tests/fragment_annotation_test.py
tests/proforma_test.py
tests/spectrum_test.py