Metadata-Version: 1.2
Name: PARS
Version: 0.1.3
Summary: Project which enable automatic downloading data from pfam and rfam databases
Home-page: https://github.com/JuliaGol/PARS
Author: Julia Gołębiowska, Adam Cicherski, Patrycja Owczarek
Author-email: je.golebiowska@student.uw.edu.pl
License: MIT license
Project-URL: Bug Tracker, https://github.com/JuliaGol/PARS/issues
Description: # PARS (PfAm bRowSer) 
        ## Description
        PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. One of the advantages of this package is the easy switch to other databases by translation of accession numbers. All of these features enable to make a detailed analysis of proteins or RNA families and deal with large datasets.
        ## Installation
        
        PARS can be installed with pip:
        
        ```
        $ python -m pip install PARS
        ```
        Alternatively, you can grab the latest source code from GitHub:
        
        ```
        $ git clone git: https://github.com/JuliaGol/PARS.git
        $ python setup.py install
        ```
        
        If you want to use functions: automatic_search, hmmpress, hmmscan, hmmsearch you have to install HAMMER tools additionally. For more information about HAMMER see: [hmmer.org](http://hmmer.org).
        ## Documentation
        To read the documentation click here: [documentation](https://owczarekp.github.io/PARS/ ) 
        ## Examples
        To go step by step see wiki. 
        
Keywords: PARS
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.6
