COPYING
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MANIFEST.in
README.rst
requirements-H5PY.txt
requirements-MPI.txt
requirements-PLOT.txt
requirements-SPHINX.txt
requirements.txt
setup.cfg
setup.py
Docs/conf3/conf.py
Docs/make3/Makefile
Docs/make3/build-api
Docs/make3/checklinks.sh
Docs/make3/run-autosummary.sh.deprec
Docs/source/aa-references.rst
Docs/source/api-TransportMaps-Algorithms.rst
Docs/source/api-TransportMaps-CLI.rst
Docs/source/api-TransportMaps-Densities-Decomposable.rst
Docs/source/api-TransportMaps-Densities-Inference.rst
Docs/source/api-TransportMaps-Densities.rst
Docs/source/api-TransportMaps-Diagnostic.rst
Docs/source/api-TransportMaps-Diagnostics.rst
Docs/source/api-TransportMaps-Distributions-Decomposable.rst
Docs/source/api-TransportMaps-Distributions-Examples-BiochemicalOxigenDemand.rst
Docs/source/api-TransportMaps-Distributions-Examples-LogGaussianCoxProcess.rst
Docs/source/api-TransportMaps-Distributions-Examples-StochasticVolatility.rst
Docs/source/api-TransportMaps-Distributions-Examples.rst
Docs/source/api-TransportMaps-Distributions-Inference.rst
Docs/source/api-TransportMaps-Distributions.rst
Docs/source/api-TransportMaps-FiniteDifference.rst
Docs/source/api-TransportMaps-Functionals.rst
Docs/source/api-TransportMaps-Maps-Decomposable.rst
Docs/source/api-TransportMaps-Maps.rst
Docs/source/api-TransportMaps-Optimization.rst
Docs/source/api-TransportMaps-Samplers.rst
Docs/source/api-TransportMaps-XML.rst
Docs/source/api-TransportMaps-tests.rst
Docs/source/api-TransportMaps.rst
Docs/source/credits.rst
Docs/source/example-BOD-4d.ipynb
Docs/source/example-banana-2d.ipynb
Docs/source/example-beta-1d.ipynb
Docs/source/example-gumbel-1d.ipynb
Docs/source/example-inverse-gumbel-1d.ipynb
Docs/source/example-inverse-stochastic-volatility-6d.ipynb
Docs/source/example-sequential-stocvol-6d.ipynb
Docs/source/examples-direct-transport.rst
Docs/source/examples-inverse-transport-from-density.rst
Docs/source/examples-transport-from-samples.rst
Docs/source/examples.rst
Docs/source/index.rst
Docs/source/install.rst
Docs/source/linking.rst
Docs/source/map-from-samples.ipynb
Docs/source/mpi-usage.ipynb
Docs/source/summary.rst
Docs/source/tutorial.rst
Docs/source/xml-descriptors.ipynb
Docs/source/.ipynb_checkpoints/cli-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-BOD-4d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-banana-2d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-beta-1d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-gumbel-1d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-inverse-gumbel-1d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-inverse-stochastic-volatility-6d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/example-sequential-stocvol-6d-checkpoint.ipynb
Docs/source/.ipynb_checkpoints/xml-descriptors-checkpoint.ipynb
Docs/source/Figures/DensityTransform.svg
Docs/source/Figures/MPI-star-structure.png
Docs/source/Figures/SG-Transform.svg
Docs/source/Figures/ScatterTransform.svg
Docs/source/Figures/SequentialHiddenMarkovModel.png
Docs/source/Figures/dataAssimilationHyper-s1-after.png
Docs/source/Figures/dataAssimilationHyper-s1-before.png
Docs/source/Figures/dataAssimilationHyper-s2-after.png
Docs/source/Figures/dataAssimilationHyper-s2-before.png
Docs/source/Figures/dataAssimilationHyper-s3-after.png
Docs/source/Figures/dataAssimilationHyper-s3-before.png
Docs/source/Figures/flowchart.pdf
Docs/source/Figures/flowchart.png
Docs/source/Figures/inv-sparsity.svg
Docs/source/Figures/mpi_eval-distributed-memory.png
Docs/source/Figures/mpi_eval-simple.png
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Docs/source/Figures/working/dataAssimilationHyper-s1-after.svg
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Docs/source/Figures/working/dataAssimilationHyper-s2-after.svg
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Docs/source/Figures/working/inkscape-preamble.tex
Docs/source/Figures/working/mpi_eval-distributed-memory.svg
Docs/source/Figures/working/mpi_eval-simple-flow.svg
Docs/source/Figures/working/auto/inv-sparsity.el
Docs/source/Figures/working/inv-sparsity/inkscape-preamble.tex
Docs/source/Figures/working/inv-sparsity/inv-sparsity.aux
Docs/source/Figures/working/inv-sparsity/inv-sparsity.log
Docs/source/Figures/working/inv-sparsity/inv-sparsity.pdf
Docs/source/Figures/working/inv-sparsity/inv-sparsity.svg
Docs/source/Figures/working/inv-sparsity/inv-sparsity.tex
Docs/source/Figures/working/inv-sparsity/optionsDecompositionGraphs.tex
Docs/source/Figures/working/inv-sparsity/stylesTikzGraphs.aux
Docs/source/Figures/working/inv-sparsity/stylesTikzGraphs.tex
Docs/source/Figures/working/inv-sparsity/tikz_sparsityVolHyper.aux
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Docs/source/Figures/working/inv-sparsity/auto/inv-sparsity.el
Docs/source/Figures/working/inv-sparsity/auto/tikz_sparsityVolHyper.el
Docs/source/aux/inv-stocvol/Distribution.dill
Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill.hdf5
Docs/source/aux/xml/BODmap.xml
Docs/source/aux/xml/IntSqSecOrd.xml
Docs/source/aux/xml/IntSqSecOrdHead.xml
Docs/source/aux/xml/LinearSpan.xml
Docs/source/cli/Sequential-IntSq-aligned-conditionals-approx-base.svg
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Docs/source/cli/cli.ipynb
Docs/source/cli/.ipynb_checkpoints/cli-checkpoint.ipynb
Examples/stable/BODmodel/DataGeneration.py
Examples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.py
Examples/stable/CPP-Module/xun/setup.py
Examples/stable/CPP-Module/xun/tests/test.py
Examples/stable/StochasticVolatility/DataGeneration.py
Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.py
Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.py
Examples/stable/TestDistributions/KLdivergence-InverseMap-InverseConstruction.py
Examples/stable/TestDistributions/KLdivergence.py
Examples/stable/TestDistributions/Regression.py
Examples/stable/cluster/voyager/run_unit_tests.py
TransportMaps/Defaults.py
TransportMaps/FiniteDifference.py
TransportMaps/HardVars.py
TransportMaps/Misc.py
TransportMaps/ObjectBase.py
TransportMaps/Routines.py
TransportMaps/__init__.py
TransportMaps/_version.py
TransportMaps.egg-info/PKG-INFO
TransportMaps.egg-info/SOURCES.txt
TransportMaps.egg-info/dependency_links.txt
TransportMaps.egg-info/not-zip-safe
TransportMaps.egg-info/requires.txt
TransportMaps.egg-info/top_level.txt
TransportMaps/Algorithms/SequentialInference.py
TransportMaps/Algorithms/__init__.py
TransportMaps/CLI/__init__.py
TransportMaps/Densities/Densities.py
TransportMaps/Densities/__init__.py
TransportMaps/Densities/Decomposable/SequentialInferenceDensities.py
TransportMaps/Densities/Decomposable/__init__.py
TransportMaps/Densities/Inference/InferenceBase.py
TransportMaps/Densities/Inference/__init__.py
TransportMaps/Diagnostics/Plotting.py
TransportMaps/Diagnostics/Routines.py
TransportMaps/Diagnostics/__init__.py
TransportMaps/Distributions/DistributionBase.py
TransportMaps/Distributions/FrozenDistributions.py
TransportMaps/Distributions/ParametricDistributionBase.py
TransportMaps/Distributions/TransportMapDistributions.py
TransportMaps/Distributions/__init__.py
TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py
TransportMaps/Distributions/Decomposable/__init__.py
TransportMaps/Distributions/Examples/__init__.py
TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.py
TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/__init__.py
TransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.py
TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py
TransportMaps/Distributions/Examples/StochasticVolatility/__init__.py
TransportMaps/Distributions/Inference/InferenceBase.py
TransportMaps/Distributions/Inference/__init__.py
TransportMaps/Functionals/AlgebraicLinearSpanApproximations.py
TransportMaps/Functionals/FrozenMonotonicFunctions.py
TransportMaps/Functionals/FunctionBase.py
TransportMaps/Functionals/LikelihoodBase.py
TransportMaps/Functionals/LinearSpanApproximationBase.py
TransportMaps/Functionals/MonotonicFunctionApproximations.py
TransportMaps/Functionals/ParametricFunctionApproximationBase.py
TransportMaps/Functionals/__init__.py
TransportMaps/Maps/FrozenTriangularTransportMaps.py
TransportMaps/Maps/FullTransportMaps.py
TransportMaps/Maps/SimpleTransportMaps.py
TransportMaps/Maps/TransportMapBase.py
TransportMaps/Maps/TriangularTransportMapBase.py
TransportMaps/Maps/TriangularTransportMaps.py
TransportMaps/Maps/__init__.py
TransportMaps/Maps/Decomposable/SequentialInferenceMaps.py
TransportMaps/Maps/Decomposable/__init__.py
TransportMaps/Optimization/Optimizers.py
TransportMaps/Optimization/__init__.py
TransportMaps/Samplers/IndependentSamplers.py
TransportMaps/Samplers/MarkovChainSamplers.py
TransportMaps/Samplers/Routines.py
TransportMaps/Samplers/SamplerBase.py
TransportMaps/Samplers/__init__.py
TransportMaps/XML/Parser.py
TransportMaps/XML/__init__.py
TransportMaps/XML/schema/map.xsd
TransportMaps/tests/TestFunctions.py
TransportMaps/tests/__init__.py
TransportMaps/tests/test_L2_minimization.py
TransportMaps/tests/test_L2_misfit.py
TransportMaps/tests/test_all.py
TransportMaps/tests/test_distributions.py
TransportMaps/tests/test_functions.py
TransportMaps/tests/test_kl_divergence.py
TransportMaps/tests/test_kl_minimization.py
TransportMaps/tests/test_laplace.py
TransportMaps/tests/test_scripts.py
TransportMaps/tests/test_transportmap_distributions.py
TransportMaps/tests/test_transportmap_distributions_sampling.py
TransportMaps/tests/test_transportmaps.py
TransportMaps/tests/test_xml.py
TransportMaps/tests/xml/maps/FullOrdIntExpLinearMap_5d.xml
TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearHeadMap_5d.xml
TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearMap_5d.xml
TransportMaps/tests/xml/maps/FullOrdIntExpTriDiagonalMap_5d.xml
TransportMaps/tests/xml/maps/FullOrdMonotLinearSpanLinearMap_5d.xml
TransportMaps/tests/xml/maps/MultiIdxMonotLinearSpanLinearMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntExpLinearMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearHeadMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearRBFMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntExpTriDiagonalMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntSqLinearMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdIntSqNonLinearHeadMap_5d.xml
TransportMaps/tests/xml/maps/TotalOrdMonotLinearSpanLinearMap_5d.xml
scripts/tmap-laplace
scripts/tmap-postprocess
scripts/tmap-sequential-postprocess
scripts/tmap-sequential-tm
scripts/tmap-tm