Metadata-Version: 2.1
Name: k-seq
Version: 0.4.2a0
Summary: Kinetic sequencing analysis by Chen lab at University of California, Santa Barbara
Home-page: https://github.com/ynshen/k-seq
Author: Yuning Shen
Author-email: ynshen23@gmail.com
License: UNKNOWN
Project-URL: Bug Reports, https://github.com/ynshen/k-seq/issues/
Project-URL: Source, https://github.com/ynshen/k-seq
Keywords: bioinformatics sequencing fitting
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Requires-Python: >=3.5
Description-Content-Type: text/markdown
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: matplotlib
Requires-Dist: python-levenshtein
Requires-Dist: seaborn
Requires-Dist: doc-helper
Requires-Dist: seq-landscape
Requires-Dist: yutility

kinetic sequencing: high through-put kinetic parameter estimation for genetic encoded biomolecules 
==============================

### Issue report:
https://github.com/ynshen/k-seq/issues

## Installation / update 

*This is the temporary installation for `k-seq` package before publication, we will upload to pypi so it could be installed through `pip install k-seq`* 

Step 1: Clone the this git repo to your local

```bash
> cd /dir/to/save/repo
> git clone https://github.com/ichen-lab-ucsb/k-seq.git

```

Step 2: run installation code

```bash
> cd /dir/to/save/repo/k-seq/
> sh ./install.sh
```

There might be a prop to uninstall the old `k-seq` package, if installed.

#### To varify the installation of package
```bash
> python -c "import k-seq"
# No error shows
```

## Getting started examples

#### [Getting started](https://github.com/ynshen/k-seq/tree/master/examples/)

#### [Getting started notebook to run interactively: `/examples/getting_started.ipynb`](https://github.com/ynshen/k-seq/blob/master/examples/getting_started.ipynb)

## See [documentation website](https://ynshen.github.io/k-seq/) for usage

## TODO
- Clean up archived old code and notebooks


