Metadata-Version: 2.1
Name: embryoseg
Version: 2.0.0
Summary: SmartSeed Segmentation for animal embryonic cells.
Home-page: https://github.com/kapoorlab/EmbryoSeg/
Author: Varun Kapoor
Author-email: randomaccessiblekapoor@gmail.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Natural Language :: English
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.9
Description-Content-Type: text/markdown
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: napari
Requires-Dist: pyqt5
Requires-Dist: natsort
Requires-Dist: scikit-image
Requires-Dist: scipy
Requires-Dist: opencv-python-headless
Requires-Dist: tifffile
Requires-Dist: matplotlib
Requires-Dist: csbdeep
Requires-Dist: stardist

# EmbryoSeg
Segmentation tool for multiple touching animal embryo cells using SmartSeeds



[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/embryoseg)
[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/embryoseg/)


## Usage
Check the [Training notebook](https://github.com/kapoorlab/EmbryoSeg/blob/main/notebooks/ColabTrainModel.ipynb).

Check the [Prediction notebook](https://github.com/kapoorlab/EmbryoSeg/blob/main/notebooks/ColabEmbryoSeg.ipynb).

## Requirements

- Python 3.9 and above.

## Install

`pip install embryoseg`



## License

Under MIT license. See [LICENSE](LICENSE).

## Authors

- Varun Kapoor <randomaccessiblekapoor@gmail.com>


