Metadata-Version: 2.1
Name: scipion-em
Version: 3.0.11
Summary: This modules contains classes related with EM
Home-page: https://github.com/scipion-em/scipion-em
Author: J.M. De la Rosa Trevin, Roberto Marabini, Grigory Sharov, Josue Gomez Blanco, Pablo Conesa, Yunior Fonseca Reyna
Author-email: delarosatrevin@scilifelab.se, roberto@cnb.csic.es, gsharov@mrc-lmb.cam.ac.uk, josue.gomez-blanco@mcgill.ca, pconesa@cnb.csic.es, fonsecareyna@cnb.csic.es
License: UNKNOWN
Keywords: scipion cryoem imageprocessing scipion-3.0
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering
Requires-Dist: scipion-pyworkflow (>=3.0.15)
Requires-Dist: biopython (==1.76)
Requires-Dist: tifffile

====
pwem
====

**pwem** is a Python module of Scipion framework for image processing in Electron Microscopy


The entire collection is licensed under the terms of the GNU Public License,
version 3 (GPLv3).

-------------
Development
-------------

To install **pwem** for development purposes, one can do:

::

    # Create a clean virtual environment
    python -m venv ~/myenv
    source ~/myenv/bin/activate
    git clone git@github.com:scipion-em/scipion-em.git
    cd scipion-em
    python -m pip install -e .  # Install in the environment as development

-------------
Running tests
-------------

First make sure that **pwem** is available as a Python module in your
current Python environment. During development, I tend to set the PYTHONPATH:

::

    cd scipion-em
    # Either you have installed as mentioned above, or modify the PYTHONPATH
    export PYTHONPATH=$PYTHONPATH:$PWD
    # After pyworkflow is accessible as a module, then:
    cd pwem/tests

    python -m unittest discover



