CHANGELOG.md
LICENSE
MANIFEST.in
Makefile
README.rst
pyproject.toml
setup.py
docs/img/gui.png
examples/snake-data.txt
examples/snake-map.txt
phyde/__init__.py
phyde/bootstrap.py
phyde/data.cpp
phyde/data.pyx
phyde/result.py
phyde/utils.py
phyde.egg-info/PKG-INFO
phyde.egg-info/SOURCES.txt
phyde.egg-info/dependency_links.txt
phyde.egg-info/not-zip-safe
phyde.egg-info/requires.txt
phyde.egg-info/top_level.txt
scripts/bootstrap_hyde.py
scripts/bootstrap_hyde_mp.py
scripts/hyde_gui.py
scripts/individual_hyde.py
scripts/individual_hyde_mp.py
scripts/run_hyde.py
scripts/run_hyde_mp.py
test/data-phylip.txt
test/data.txt
test/map.txt
test/test.py
test/triples.txt