README.txt
setup.cfg
setup.py
doc/ChangeLog.txt
doc/Makefile
doc/contents.rst
doc/make.bat
doc/source/EGFR-ErbB_PCB2009.rst
doc/source/ExtLiverBMC2012.rst
doc/source/ExtLiverPCB.rst
doc/source/ExtLiverPriHu-MCP2010.rst
doc/source/LiverDREAM.rst
doc/source/README.txt
doc/source/TCellPCB2007.rst
doc/source/ToyMMB.rst
doc/source/ToyMMB_Feedback.rst
doc/source/ToyMMB_FeedbackAnd.rst
doc/source/ToyMMB_bis.rst
doc/source/ToyMSB2009.rst
doc/source/ToyPB.rst
doc/source/ToyPCB.rst
doc/source/addmodel.rst
doc/source/conf.py
doc/source/index.rst
doc/source/quickstart.rst
doc/source/references.rst
doc/source/summary.rst
doc/source/_static/container.css
doc/source/_static/default.css
doc/source/_static/network.png
share/data/EGFR-ErbB_PCB2009/EGFR-ErbB_PCB2009.csv
share/data/EGFR-ErbB_PCB2009/EGFR-ErbB_PCB2009.dot
share/data/EGFR-ErbB_PCB2009/EGFR-ErbB_PCB2009.sif
share/data/EGFR-ErbB_PCB2009/EGFR-ErbB_PCB2009.svg
share/data/EGFR-ErbB_PCB2009/EGFR-ErbB_PCB2009_ORonly.sif
share/data/EGFR-ErbB_PCB2009/app_para.m
share/data/EGFR-ErbB_PCB2009/description.txt
share/data/EGFR-ErbB_PCB2009/docu.pdf
share/data/EGFR-ErbB_PCB2009/egfgesamt.png
share/data/EGFR-ErbB_PCB2009/egfgesamt_layout.dat
share/data/EGFR-ErbB_PCB2009/metabolites
share/data/EGFR-ErbB_PCB2009/model.dot
share/data/EGFR-ErbB_PCB2009/reactions
share/data/EGFR-ErbB_PCB2009/reactions_notes
share/data/EGFR-ErbB_PCB2009/uniprot.dat
share/data/EGFR-ErbB_PCB2009/data/BoolData-Exp1.csv
share/data/EGFR-ErbB_PCB2009/data/BoolData-Exp2.csv
share/data/EGFR-ErbB_PCB2009/data/RawData-Exp1.csv
share/data/EGFR-ErbB_PCB2009/data/RawData-Exp2.csv
share/data/EGFR-ErbB_PCB2009/data/__init__.py
share/data/ExtLiverBMC2012/MCP_HepG2mod4.csv
share/data/ExtLiverBMC2012/MCP_PriHumod5.csv
share/data/ExtLiverBMC2012/MD-ExtLiverPCB.csv
share/data/ExtLiverBMC2012/PKN-ExtLiverBMC2012.dot
share/data/ExtLiverBMC2012/PKN-ExtLiverBMC2012.sif
share/data/ExtLiverBMC2012/PKN-ExtLiverBMC2012.svg
share/data/ExtLiverBMC2012/description.txt
share/data/ExtLiverBMC2012/pkn.sif
share/data/ExtLiverMSB2009/MD-LiverMSB2009.csv
share/data/ExtLiverMSB2009/MD-LiverMSB2009_raw.csv
share/data/ExtLiverMSB2009/PKN-LiverMSB2009.sif
share/data/ExtLiverMSB2009/description.txt
share/data/ExtLiverMSB2009/pkn.sif
share/data/ExtLiverMSB2009/pkn.svg
share/data/ExtLiverPCB/ExtLiverPCB.csv
share/data/ExtLiverPCB/ExtLiverPCB.dot
share/data/ExtLiverPCB/ExtLiverPCB.sif
share/data/ExtLiverPCB/ExtLiverPCB.svg
share/data/ExtLiverPCB/description.txt
share/data/ExtLiverPriHu-MCP2010/.RData
share/data/ExtLiverPriHu-MCP2010/.Rhistory
share/data/ExtLiverPriHu-MCP2010/MD-ExtLiverPriHu-MCP2010-mod5-normed.csv
share/data/ExtLiverPriHu-MCP2010/MD-ExtLiverPriHu-MCP2010-mod5.csv
share/data/ExtLiverPriHu-MCP2010/PKN-ExtLiverPriHu-MCP2010.sif
share/data/ExtLiverPriHu-MCP2010/aliases.py
share/data/ExtLiverPriHu-MCP2010/description.txt
share/data/HepG2/MD-ExtLiverHepG2-MCP2010-mod4.csv
share/data/HepG2/PKN-ExtLiverHepG2-MCP2010.sif
share/data/HepG2/description.txt
share/data/LiverDREAM/LiverDREAM.csv
share/data/LiverDREAM/LiverDREAM.dot
share/data/LiverDREAM/LiverDREAM.sif
share/data/LiverDREAM/LiverDREAM.svg
share/data/LiverDREAM/SimResultsT11.pdf
share/data/LiverDREAM/SimResultsT12.pdf
share/data/LiverDREAM/SimResultsT13.pdf
share/data/LiverDREAM/description.txt
share/data/LiverDREAM_PKN_Subnetwork_AddFeedback/LiverDREAM_PKN_Subnetwork_AddFeedback.cys
share/data/LiverDREAM_PKN_Subnetwork_AddFeedback/LiverDREAM_PKN_Subnetwork_AddFeedback.sif
share/data/LiverDREAM_PKN_Subnetwork_AddFeedback/LiverDataDREAMMIDAS.csv
share/data/LiverDREAM_PKN_Subnetwork_AddFeedback/description.txt
share/data/TCellPCB2007/.Rhistory
share/data/TCellPCB2007/JSR_species.txt
share/data/TCellPCB2007/MD-TCellPCB2007.csv
share/data/TCellPCB2007/PKN-TCellPCB2007.dot
share/data/TCellPCB2007/PKN-TCellPCB2007.sif
share/data/TCellPCB2007/PKN-TCellPCB2007.svg
share/data/TCellPCB2007/description.txt
share/data/TCellPCB2007/metabolites
share/data/TCellPCB2007/model.dot
share/data/TCellPCB2007/reactions
share/data/ToyMMB/MD-ToyMMB.csv
share/data/ToyMMB/PKN-ToyMMB.dot
share/data/ToyMMB/PKN-ToyMMB.sif
share/data/ToyMMB/PKN-ToyMMB.svg
share/data/ToyMMB/aliases.py
share/data/ToyMMB/description.txt
share/data/ToyMMB_Feedback/MD-ToyMMB_Feedback.csv
share/data/ToyMMB_Feedback/MD-ToyMMB_Feedback2.csv
share/data/ToyMMB_Feedback/MD-ToyMMB_Feedback3.csv
share/data/ToyMMB_Feedback/PKN-ToyMMB_Feedback.dot
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share/data/ToyMMB_Feedback/description.txt
share/data/ToyMMB_FeedbackAnd/MD-ToyMMB_FeedbackAnd.csv
share/data/ToyMMB_FeedbackAnd/PKN-ToyMMB_FeedbackAnd.cys
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share/data/ToyMMB_FeedbackAnd/PKN-ToyMMB_FeedbackAnd.svg
share/data/ToyMMB_FeedbackAnd/Type.NA
share/data/ToyMMB_FeedbackAnd/description.txt
share/data/ToyMMB_bis/MD-ToyMMB_bis.csv
share/data/ToyMMB_bis/PKN-ToyMMB_bis.sif
share/data/ToyMMB_bis/PKN-ToyMMB_bis.svg
share/data/ToyMMB_bis/description.py
share/data/ToyMMB_bis/description.txt
share/data/ToyMSB/MD-Toy-MSB2009.csv
share/data/ToyMSB/PKN-Toy-MSB2009.sif
share/data/ToyMSB/Toy-MSB2009.dot
share/data/ToyMSB/Toy-MSB2009.svg
share/data/ToyMSB/description.txt
share/data/ToyMSB/model.dot
share/data/ToyMSB2009/MD-ToyMSB2009.csv
share/data/ToyMSB2009/PKN-ToyMSB2009.dot
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share/data/ToyMSB2009/PKN-ToyMSB2009.svg
share/data/ToyMSB2009/description.txt
share/data/ToyPB/MD-ToyPB.csv
share/data/ToyPB/PKN-ToyPB.sif
share/data/ToyPB/PKN-ToyPB_2timePoints.sif
share/data/ToyPB/PKN-ToyPB_shuffled.sif
share/data/ToyPB/ToyModelPB.svg
share/data/ToyPB/description.txt
share/data/ToyPCB/MD-ToyPCB.csv
share/data/ToyPCB/PKN-ToyPCB.dot
share/data/ToyPCB/PKN-ToyPCB.sif
share/data/ToyPCB/PKN-ToyPCB.svg
share/data/ToyPCB/description.txt
share/data/XML/midas.xml
share/data/XML/midas.xsd
src/cellnopt/__init__.py
src/cellnopt.data.egg-info/PKG-INFO
src/cellnopt.data.egg-info/SOURCES.txt
src/cellnopt.data.egg-info/dependency_links.txt
src/cellnopt.data.egg-info/namespace_packages.txt
src/cellnopt.data.egg-info/requires.txt
src/cellnopt.data.egg-info/top_level.txt
src/cellnopt/data/__init__.py
src/data/XMLMidas.py
src/data/__init__.py
src/data/cnodata.py
src/data/tools.py
test/test_tools.py
test/test_xmlmidas.py