**ExtLiverPCB**


:references:

.. [1] **Morris, Melody K and Saez-Rodriguez, Julio and Clarke, David C and Sorger,Peter K and Lauffenburger, Douglas a**,
   *Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli.*
   PLoS computational biology, 7, 3, 2011
   `Citation <http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3048376>`_

.. [2] **M. K. Morris, I. Melas, J. Saez-Rodriguez.**
   *Construction of cell type-specific logic models of signaling networks using CellNetOptimizer.* 
   to appear in Methods in Molecular Biology:Computational Toxicology, Ed.
   B. Reisfeld and A. Mayeno, Humana Press.

.. [3] **J. Saez-Rodriguez, L. G. Alexopoulos, J. Epperlein, R. Samaga, D. A. Lauffenburger, S. Klamt and P. K. Sorger.**
   *Discrete logic modeling as a means to link pr    otein signaling networks with functional analysis of mammalian signal transduction*
   Molecular Systems Biology, 5:331, 2009



.. note:: there is a matlab version in the MATLAB SVN (trunk/CNO/Models/SampleModels/ExtLiverPKNPCB/) which has slight differences:

    #. irs1s is now irs1_s
    #. small caps are replaced by caps were needed
    #. intermediate and gates for the (stat1 1 stat13) and (stat1 1 stat13) reactions








