LICENSE
README.md
setup.py
brainlit/__init__.py
brainlit.egg-info/PKG-INFO
brainlit.egg-info/SOURCES.txt
brainlit.egg-info/dependency_links.txt
brainlit.egg-info/requires.txt
brainlit.egg-info/top_level.txt
brainlit/algorithms/__init__.py
brainlit/algorithms/connect_fragments/__init__.py
brainlit/algorithms/connect_fragments/dynamic_programming_viterbi.py
brainlit/algorithms/detect_somas/__init__.py
brainlit/algorithms/detect_somas/detect.py
brainlit/algorithms/generate_fragments/__init__.py
brainlit/algorithms/generate_fragments/adaptive_thresh.py
brainlit/algorithms/generate_fragments/tube_seg.py
brainlit/algorithms/trace_analysis/__init__.py
brainlit/algorithms/trace_analysis/fit_spline.py
brainlit/algorithms/trace_analysis/spline_fxns.py
brainlit/feature_extraction/__init__.py
brainlit/feature_extraction/base.py
brainlit/feature_extraction/neighborhood.py
brainlit/preprocessing/__init__.py
brainlit/preprocessing/image_process.py
brainlit/preprocessing/preprocess.py
brainlit/registration/__init__.py
brainlit/registration/__version__.py
brainlit/registration/file_io.py
brainlit/registration/imageData.py
brainlit/registration/transform.py
brainlit/registration/utilities.py
brainlit/registration/visualization.py
brainlit/registration/lddmm/__init__.py
brainlit/registration/lddmm/_lddmm.py
brainlit/registration/lddmm/_lddmm_utilities.py
brainlit/registration/lddmm/_test_lddmm.py
brainlit/registration/lddmm/_test_lddmm_utilities.py
brainlit/registration/preprocessing/__init__.py
brainlit/registration/preprocessing/bias_and_artifact_correction.py
brainlit/registration/preprocessing/initialization.py
brainlit/registration/preprocessing/normalization.py
brainlit/registration/preprocessing/resampling.py
brainlit/registration/presets/__init__.py
brainlit/registration/presets/batch_preprocessing.py
brainlit/registration/presets/registration_parameters.py
brainlit/utils/Neuron_trace.py
brainlit/utils/__init__.py
brainlit/utils/benchmarking_params.py
brainlit/utils/session.py
brainlit/utils/upload.py
brainlit/utils/util.py
brainlit/viz/__init__.py
brainlit/viz/swc2voxel.py