LICENSE.md
README.md
setup.py
pathopatch/__init__.py
pathopatch/annotation_conversion.py
pathopatch/cli.py
pathopatch/macenko_vector_generation.py
pathopatch/wsi_extraction.py
pathopatch.egg-info/PKG-INFO
pathopatch.egg-info/SOURCES.txt
pathopatch.egg-info/dependency_links.txt
pathopatch.egg-info/entry_points.txt
pathopatch.egg-info/requires.txt
pathopatch.egg-info/top_level.txt
pathopatch/base_ml/__init__.py
pathopatch/base_ml/base_cli.py
pathopatch/config/__init__.py
pathopatch/config/config.py
pathopatch/data/__init__.py
pathopatch/patch_extraction/__init__.py
pathopatch/patch_extraction/dataset.py
pathopatch/patch_extraction/patch_extraction.py
pathopatch/patch_extraction/process_batch.py
pathopatch/patch_extraction/storage.py
pathopatch/utils/__init__.py
pathopatch/utils/exceptions.py
pathopatch/utils/file_handling.py
pathopatch/utils/filters.py
pathopatch/utils/logger.py
pathopatch/utils/masking.py
pathopatch/utils/patch_dataset.py
pathopatch/utils/patch_util.py
pathopatch/utils/plotting.py
pathopatch/utils/tools.py
pathopatch/wsi_interfaces/__init__.py
pathopatch/wsi_interfaces/cucim_deepzoom.py
pathopatch/wsi_interfaces/openslide_deepzoom.py
pathopatch/wsi_interfaces/wsidicomizer_openslide.py
tests/__init__.py
tests/test_core_modules/__init__.py
tests/test_core_modules/test_annotations_filtering.py
tests/test_core_modules/test_baseline.py
tests/test_core_modules/test_complex_setup.py
tests/test_core_modules/test_downsample.py
tests/test_core_modules/test_roi.py
tests/test_core_modules/test_roi_context.py
tests/test_core_modules/test_target_magnification.py
tests/test_core_modules/test_target_mpp.py
tests/test_core_modules/test_target_mpp_macenko.py
tests/test_utils/__init__.py
tests/test_utils/test_csv_loading.py
tests/test_utils/test_filters.py
tests/test_utils/test_mask_rgb.py