Metadata-Version: 2.1
Name: modelestimator-v2
Version: 0.0.1
Summary: Program for estimating amino acid replacement rates
Home-page: https://github.com/RubenRidderstrom/modelestimator
Author: Ruben Ridderström
Author-email: ruben.ridderstrom@gmail.com
License: GPLv3
Description: Usage: modelestimator <format> <options> infiles
        
        <format> should be either FASTA, STOCKHOLM or PHYLIP
        Output is a rate matrix and residue distribution vector.
                
        Options:
            -threshold or -t <f> 
        	Stop when consecutive iterations do not change by more than <f>. Default is 0.001.
            -bootstrap or -b <r>
        	Perform bootstrapping on multialignment with <r> resamplings. Only one infile should be given in this mode. Returns bootstrap norm.
        
        Example usage:
            modelestimator fasta -t 0.001 file1.fa file2.fa file3.fa
            modelestimator fasta -b 200 file.fa
Platform: UNKNOWN
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