README.md
setup.py
MDAKit/__init__.py
MDAKit/main.py
MDAKit.egg-info/PKG-INFO
MDAKit.egg-info/SOURCES.txt
MDAKit.egg-info/dependency_links.txt
MDAKit.egg-info/entry_points.txt
MDAKit.egg-info/top_level.txt
MDAKit/lib/__init__.py
MDAKit/lib/msmtools/Features.py
MDAKit/lib/msmtools/GMRQ.py
MDAKit/lib/msmtools/__init__.py
MDAKit/lib/msmtools/msm.py
MDAKit/tools/__init__.py
MDAKit/tools/align.py
MDAKit/tools/base.py
MDAKit/tools/catTraj.py
MDAKit/tools/chemicalShift.py
MDAKit/tools/contact.py
MDAKit/tools/convert.py
MDAKit/tools/dssp.py
MDAKit/tools/hydrogenbond.py
MDAKit/tools/hydrogenbondCompare.py
MDAKit/tools/rg.py
MDAKit/tools/rmsd.py
MDAKit/tools/rmsf.py
MDAKit/tools/CD/CD_plots.py
MDAKit/tools/CD/CD_spectra.py
MDAKit/tools/CD/__init__.py
MDAKit/tools/CD/examples/__init__.py
MDAKit/tools/CKtest/CKtestV9.py
MDAKit/tools/CKtest/__init__.py
MDAKit/tools/ChemicalShift/__init__.py
MDAKit/tools/ChemicalShift/shiftx2-msm.py
MDAKit/tools/ChemicalShift/shiftx2-plot.py
MDAKit/tools/ChemicalShift/shiftx2-xtc.py
MDAKit/tools/ChemicalShift/shiftx2-xtcs.py
MDAKit/tools/PCA/__init__.py
MDAKit/tools/PCA/md2pc.py
MDAKit/tools/PCA/prody_pca.py
MDAKit/tools/PCA/xtcfs2XTC.py
MDAKit/tools/PCA/xtcfs2dcd.py
MDAKit/tools/cluster/__init__.py
MDAKit/tools/cluster/cluster_02_distRMSD.py
MDAKit/tools/cluster/cluster_assign.py
MDAKit/tools/cluster/cluster_gromos.py
MDAKit/tools/cluster/cluster_rmsd_matrix.py
MDAKit/tools/distance/__init__.py
MDAKit/tools/rmsd/__init__.py
MDAKit/tools/rmsd/rmsd-meta.py
MDAKit/tools/rmsd/rmsd-msm.py
MDAKit/tools/rmsd/rmsd-plot.py
MDAKit/tools/traj/__init__.py
MDAKit/tools/traj/traj-align.py
MDAKit/utils/__init__.py
MDAKit/utils/aminoacids.py
MDAKit/utils/sequence.py
test/test.py