LICENSE
Pipfile
README.md
setup.py
bin/ttlcmp
docs/NeuronLangExample.ipynb
docs/neurons_notebook.md
docs/ttlser.md
patches/doid-bridge-ext.patch
patches/doid-ext-imports.patch
patches/doid-ext-so.patch
patches/doid-ext.patch
patches/patches.yaml
pyontutils/__init__.py
pyontutils/aba_uberon.py
pyontutils/chebi_bridge.py
pyontutils/closed_namespaces.py
pyontutils/cocomac_uberon.py
pyontutils/combinators.py
pyontutils/config.py
pyontutils/core.py
pyontutils/docs.py
pyontutils/dumpnlx.py
pyontutils/fragment_map.py
pyontutils/gen_nat_models.py
pyontutils/graphml_to_ttl.py
pyontutils/hbp_cells.py
pyontutils/hbp_merge.py
pyontutils/hbp_parc_output.py
pyontutils/hierarchies.py
pyontutils/htmlfun.py
pyontutils/ilx_utils.py
pyontutils/ilxcli.py
pyontutils/ksdesc_bridge.py
pyontutils/librdf.py
pyontutils/make_catalog.py
pyontutils/mapnlxilx.py
pyontutils/namespaces.py
pyontutils/necromancy.py
pyontutils/nif_cell.py
pyontutils/nifgafix.py
pyontutils/obo_io.py
pyontutils/ontload.py
pyontutils/ontree.py
pyontutils/ontutils.py
pyontutils/overlaps.py
pyontutils/phenotype_namespaces.py
pyontutils/process_fixed.py
pyontutils/qnamefix.py
pyontutils/rdflib_profile.py
pyontutils/scig.py
pyontutils/scigraph.py
pyontutils/scigraph_client.py
pyontutils/scigraph_codegen.py
pyontutils/scigraph_deploy.py
pyontutils/scr_sync.py
pyontutils/slimgen.py
pyontutils/ttlfmt.py
pyontutils/ttlser.py
pyontutils/utils.py
pyontutils/methods/__init__.py
pyontutils/methods/__main__.py
pyontutils/methods/core.py
pyontutils/methods/helper.py
pyontutils/neurons/README.md
pyontutils/neurons/__init__.py
pyontutils/neurons/build.py
pyontutils/neurons/core.py
pyontutils/neurons/example.py
pyontutils/neurons/lang.py
pyontutils/neurons/models/__init__.py
pyontutils/neurons/models/allen_cell_types.py
pyontutils/neurons/models/basic_neurons.py
pyontutils/neurons/models/cuts.py
pyontutils/neurons/models/huang2017.py
pyontutils/neurons/models/ma2015.py
pyontutils/neurons/models/phenotype_direct.py
pyontutils/parcellation/__init__.py
pyontutils/parcellation/__main__.py
pyontutils/parcellation/aba.py
pyontutils/parcellation/coco.py
pyontutils/parcellation/freesurfer.py
pyontutils/parcellation/whs.py
pyontutils/resources/26451489 table 1.csv
pyontutils/resources/NIF_conn_allcols_minimal_clean_filtered2.csv
pyontutils/resources/WHS_SD_rat_atlas_v1.label
pyontutils/resources/WHS_SD_rat_atlas_v1_labels.ilf
pyontutils/resources/WHS_SD_rat_atlas_v2.label
pyontutils/resources/WHS_SD_rat_atlas_v2_labels.ilf
pyontutils/resources/all-uri.neuinfo.org-uris-old.pickle
pyontutils/resources/all-uri.neuinfo.org-uris-old2.pickle
pyontutils/resources/all-uri.neuinfo.org-uris.pickle
pyontutils/resources/chebi-subset-ids.txt
pyontutils/resources/common-usage-types.csv
pyontutils/resources/gene-subset-ids.txt
pyontutils/resources/human_connectome_project_2016.csv
pyontutils/resources/neuron_phenotype.csv
pyontutils/resources/neuron_phenotype_edges.csv
pyontutils/resources/nlx_properties
pyontutils/resources/pax-4th-ed-indexes.txt
pyontutils/resources/pax-6th-ed-indexes.txt
pyontutils/resources/paxinos09names.txt
pyontutils/resources/paxm-2nd-ed-indexes.txt
pyontutils/resources/paxm-3rd-ed-indexes.txt
pyontutils/resources/swanson_aligned.txt
resolver/README.md
resolver/aux-resolver.conf
resolver/json.lua
resolver/make_config.py
resolver/nif-ont-resolver.conf
resolver/redirect.html
resolver/redirect.js
resolver/version-lookup.lua
scigraph/README.md
scigraph/graphload.yaml.template
scigraph/nifstd_curie_map.yaml
scigraph/scigraph-services.conf.template
scigraph/scigraph-services.service.template
scigraph/services.yaml.template
scigraph/start.sh.template
scigraph/stop.sh.template
test/__init__.py
test/example_neurons.py
test/example_neurons.ttl
test/good.ttl
test/list-good.ttl
test/list-nasty.ttl
test/nasty.ttl
test/prefix.ttl
test/scogood.ttl
test/test_cli.py
test/test_config.py
test/test_core.py
test/test_neurons.py
test/test_ttlser.py
test/test_utils.py