MANIFEST.in
README.md
setup.py
espresso/__init__.py
espresso/client.py
espresso/cromwell.py
espresso/fastq.py
espresso/references.py
espresso/vcf.py
espresso/workflows.py
espresso/inputs/bam-to-cram.b37.resources.json
espresso/inputs/bam-to-cram.hg38.resources.json
espresso/inputs/bam-to-cram.params.json
espresso/inputs/haplotype-calling.b37.resources.json
espresso/inputs/haplotype-calling.hg38.resources.json
espresso/inputs/haplotype-calling.params.json
espresso/inputs/haplotypecaller-gvcf-gatk4.b37.resources.json
espresso/inputs/haplotypecaller-gvcf-gatk4.hg38.resources.json
espresso/inputs/haplotypecaller-gvcf-gatk4.params.json
espresso/inputs/joint-discovery.b37.resources.json
espresso/inputs/joint-discovery.hg38.resources.json
espresso/inputs/joint-discovery.params.json
espresso/inputs/paired-fastq-to-unmapped-bam.b37.resources.json
espresso/inputs/paired-fastq-to-unmapped-bam.hg38.resources.json
espresso/inputs/paired-fastq-to-unmapped-bam.params.json
espresso/inputs/processing-for-variant-discovery-gatk4.b37.resources.json
espresso/inputs/processing-for-variant-discovery-gatk4.hg38.resources.json
espresso/inputs/processing-for-variant-discovery-gatk4.params.json
espresso/inputs/validate-bam.b37.resources.json
espresso/inputs/validate-bam.hg38.resources.json
espresso/inputs/validate-bam.params.json
espresso/scripts/__init__.py
espresso/scripts/espresso.py
espresso/workflows/bam-to-cram.wdl
espresso/workflows/haplotype-calling.wdl
espresso/workflows/haplotypecaller-gvcf-gatk4.wdl
espresso/workflows/joint-discovery-gatk4-local.wdl
espresso/workflows/paired-fastq-to-unmapped-bam.wdl
espresso/workflows/processing-for-variant-discovery-gatk4.wdl
espresso/workflows/validate-bam.wdl
espresso_caller.egg-info/PKG-INFO
espresso_caller.egg-info/SOURCES.txt
espresso_caller.egg-info/dependency_links.txt
espresso_caller.egg-info/entry_points.txt
espresso_caller.egg-info/top_level.txt