Metadata-Version: 1.2
Name: snptoolkit
Version: 2.2.9
Summary: Explore, filter, annotate and analyse your SNPs/indels from VCF files
Home-page: https://github.com/Amine-Namouchi/snpToolkit
Author: Amine Namouchi
Author-email: amine.namouchi@gmail.com
License: GPLv3+
Description: Please visit the full documentation at https://snptoolkit.readthedocs.io/en/latest/index.html
                                snpToolkit is a computational framework written in Python 3. snpToolkit allows users to:
                                - Visualize the content of their VCF files.
                                - Filter SNPs based on multiple criteria.
                                - Extract the distribution of all indels according to genome annotation.
                                - Visualize and explore the annotated SNPs for all analyzed files.
                                - Combine all snpToolkit output files generated using the annotate option.
                                - Analyse your data using two dimentionality reduction methods: PCA and UMAP.
                                snpToolkit detects automatically if the input vcf files were generated using samtools mpileup, gatk HaplotypeCaller or freebayes. Vcf files could be gzipped or not.
Keywords: SNPs filtering annotation variants calling
Platform: UNKNOWN
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: OS Independent
Requires-Python: >=3.0
