MANIFEST.in
README.md
setup.py
lama/__init__.py
lama/common.py
lama/current_commit
lama/monitor_memory.py
lama/paths.py
lama/elastix/__init__.py
lama/elastix/deformations.py
lama/elastix/elastix_registration.py
lama/elastix/invert_transforms.py
lama/elastix/invert_volumes.py
lama/img_processing/__init__.py
lama/img_processing/glcm3d.py
lama/img_processing/misc.py
lama/img_processing/normalise.py
lama/img_processing/normalise_background.py
lama/img_processing/organ_vol_calculation.py
lama/img_processing/read_minc.py
lama/lib/__init__.py
lama/lib/addict.py
lama/lib/transformations.py
lama/qc/__init__.py
lama/qc/collate_qc.py
lama/qc/img_grid.py
lama/qc/metric_charts.py
lama/qc/organ_vol_plots.py
lama/qc/qc_images.py
lama/qc/roi_overlay.py
lama/registration_pipeline/__init__.py
lama/registration_pipeline/parallel_average.py
lama/registration_pipeline/run_lama.py
lama/registration_pipeline/validate_config.py
lama/registration_pipeline/optimise/__init__.py
lama/registration_pipeline/optimise/points.py
lama/registration_pipeline/optimise/regop_points.py
lama/registration_pipeline/optimise/run_lama_configs_grid.py
lama/registration_pipeline/optimise/test_regop.py
lama/scripts/__init__.py
lama/scripts/intensity_normalisation.py
lama/scripts/lama_get_test_data.py
lama/scripts/lama_get_walkthrough_data.py
lama/scripts/lama_job_runner.py
lama/scripts/lama_permutation_stats.py
lama/scripts/lama_reg.py
lama/scripts/lama_stats.py
lama/staging/__init__.py
lama/staging/affine_similarity_scaling_factors.py
lama/staging/baseline_selection.py
lama/staging/skeleton_length.py
lama/staging/staging_metric_maker.py
lama/stats/__init__.py
lama/stats/automated_annotation.py
lama/stats/cluster_plots.py
lama/stats/linear_model.py
lama/stats/permutation_stats/__init__.py
lama/stats/permutation_stats/distributions.py
lama/stats/permutation_stats/p_thresholds.py
lama/stats/permutation_stats/run_permutation_stats.py
lama/stats/rscripts/lmFast.R
lama/stats/rscripts/r_padjust.R
lama/stats/standard_stats/__init__.py
lama/stats/standard_stats/data_loaders.py
lama/stats/standard_stats/lama_stats_new.py
lama/stats/standard_stats/read_config.py
lama/stats/standard_stats/results_writer.py
lama/stats/standard_stats/stats_objects.py
lama/tests/__init__.py
lama/tests/test_data_generation.py
lama/tests/test_population_average.py
lama/tests/test_standard_stats.py
lama/tests/archive/__init__.py
lama/tests/archive/_test_automated_annotation.py
lama/tests/archive/_test_baseline_selection.py
lama/tests/archive/test_config_validation.py
lama/tests/archive/test_lama.py
lama/tests/archive/test_lama_stats.py
lama/tests/archive/test_normalisation.py
lama/tests/archive/test_run_permutation_stats.py
lama/utilities/__init__.py
lama/utilities/config_checksum.py
lama/utilities/lama_convert_16_to_8.py
lama/utilities/lama_histogram_batch.py
lama/utilities/lama_img_info.py
lama/utilities/lama_pad_volumes.py
lama/utilities/remove_output_dirs.py
lama/utilities/vpv_line_loader.py
lama_phenotype_detection.egg-info/PKG-INFO
lama_phenotype_detection.egg-info/SOURCES.txt
lama_phenotype_detection.egg-info/dependency_links.txt
lama_phenotype_detection.egg-info/entry_points.txt
lama_phenotype_detection.egg-info/requires.txt
lama_phenotype_detection.egg-info/top_level.txt