Metadata-Version: 2.1
Name: brainrender
Version: 2.0.5.0
Summary: Visualisation and exploration of brain atlases and other anatomical data
Home-page: https://github.com/brainglobe/brainrender
Author: Federico Claudi, Adam Tyson, Luigi Petrucco
License: UNKNOWN
Description: 
        # Brainrender
        <p align="center">
          <img width="1200" src="imgs/three_atlases.png">
        </p>
        
        [![Python Version](https://img.shields.io/pypi/pyversions/brainrender.svg)](https://pypi.org/project/brainrender)
        [![PyPI](https://img.shields.io/pypi/v/brainrender.svg)](https://pypi.org/project/brainrender)
        [![Build Status](https://travis-ci.com/brainglobe/brainrender.svg?branch=master)](https://travis-ci.com/brainglobe/brainrender)
        [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
        [![Coverage Status](https://coveralls.io/repos/github/brainglobe/brainrender/badge.svg)](https://coveralls.io/github/brainglobe/brainrender)
        [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/python/black)
        
        **!! NOTE: you're looking at brainrender v2.0**
        We have recently released a new version of `brainrender`, version 2.0 (:tada:). This consists of an entire re-writing of the whole library to make the code cleaner, more compact. easier to read and easier to use.
        We've also included a new GUI packaged with `brainrender`.
        However, this does mean that code written to work with previous versions of `brainrender` will need to be adjusted slightly to work with the newer versions.
        If you are transitioning to the new `brainrender` version, please reade [the guide we have put together](https://docs.brainrender.info/usage/overview/v1-greater-than-v2) about moving from v1.0 to v2.0.
        
        **`brainrender` is a python package for the visualization of three dimensional neuro-anatomical data. It can be used to render data from publicly available data set (e.g. Allen Brain atlas) as well as user generated experimental data. The goal of brainrender is to facilitate the exploration and dissemination of neuro-anatomical data by providing a user-friendly platform to create high-quality 3D renderings.**
        
        ## Docs
        :books: [brainrender docs](https://docs.brainrender.info/).
        
        :paper: [brainrender paper](https://www.biorxiv.org/content/10.1101/2020.02.23.961748v1.article-metrics)
        
        ## Installation
        You can [install `brainrender`](https://docs.brainrender.info/installation/installation) with:
        
        ```
        pip install brainrender
        ``` 
        
        ## Citing brainrender
        If you use `brainrender` in your work, please cite:
        ```
          Claudi, Federico, Adam L. Tyson, and Tiago Branco. 2020. “Brainrender. A Python Based Software for Visualisation of Neuroanatomical and Morphological Data.” Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.02.23.961748.
        ```
        
        ## Examples
        The following images were created for the publication of the [brainrender paper](https://www.biorxiv.org/content/10.1101/2020.02.23.961748v1.article-metrics). References to the original data being visualised can also be found in the paper.
        
        <p align="center">
        <img src='imgs/cellfinder_cells_3.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/gene_expression.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/human_regions.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/injection_2.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/mouse_neurons_2.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/probes.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/zfish_functional_clusters_2.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/zfish_neurons.png' width=500 style='margin:auto'></img>
        </p>
        <p align="center">
        <img src='imgs/zfish_regions.png' width=500 style='margin:auto'></img>
        </p>
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: Microsoft :: Windows :: Windows 10
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Provides-Extra: lint
Provides-Extra: nb
Provides-Extra: dev
Provides-Extra: pyside2
Provides-Extra: pyqt5
