Metadata-Version: 2.1
Name: mindscope_utilities
Version: 0.1.4
Summary: Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program
Home-page: https://github.com/AllenInstitute/mindscope_utilities
Author: Allen Institute
Author-email: marinag@alleninstitute.org, iryna.yavorska@alleninstitute.org, kater@alleninstitute.org, dougo@alleninstitute.org,
License: Allen Institute
Description: # mindscope_utilities
        Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program.
        
        Functions in this repository depend on the AllenSDK
        https://github.com/AllenInstitute/AllenSDK
        
        # Installation
        
        Set up a dedicated conda environment:
        
        ```
        conda create -n mindscope_utilities python=3.8 
        ```
        
        Activate the new environment:
        
        ```
        conda activate mindscope_utilities
        ```
        
        Make the new environment visible in the Jupyter 
        ```
        pip install ipykernel
        python -m ipykernel install --user --name mindscope_utilities
        ```
        
        Install mindscope_utilities
        ```
        pip install mindscope_utilities
        ```
        
        Or if you intend to edit the source code, install in developer mode:
        ```
        git clone https://github.com/AllenInstitute/mindscope_utilities.git
        cd mindscope_utilities
        pip install -e .
        ```
        
        # Testing
        
        Tests are run on CircleCI on every github commit.
        
        Tests can be run locally by running the following at the command line:
        ```
        flake8 mindscope_utilities
        pytest
        ```
        
        # Level of Support
        
        We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests.
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: Other/Proprietary License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.8
Description-Content-Type: text/markdown
