Metadata-Version: 1.1
Name: nanoget
Version: 0.11.5
Summary: Functions to extract information from Oxford Nanopore sequencing data and alignments.
Home-page: https://github.com/wdecoster/nanoget
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description: nanoget
        =======
        
        | This module provides functions to extract useful metrics from Oxford
          Nanopore sequencing reads and alignments.
        | Data can be presented in the following formats:
        | - A sorted bam file ``processBam(bamfile, threads)``
        | - A standard fastq file ``processFastqPlain(fastqfile)``
        | - A fastq file with metadata from MinKNOW or Albacore
          ``processFastq_rich(fastqfile)``
        | - A sequencing\_summary file generated by Albacore
          ``processSummary(sequencing_summary.txt)``
        
        Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
        returned as a pandas DataFrame with standardized headernames for
        convenient extraction. The functions perform logging while being called
        and extracting data.
        
Keywords: nanopore sequencing plotting quality control
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
