.gitignore
.hgtags
.travis.yml
CONTRIBUTORS
LICENSE.txt
Makefile
README.rst
TODO
pyproject.toml
setup.py
tox.ini
.github/CODEOWNERS
.github/labels.yml
.github/workflows/labels.yml
.github/workflows/stale.yml
docs/Makefile
docs/source/algorithms.rst
docs/source/align.rst
docs/source/cigar_utils.rst
docs/source/conf.py
docs/source/index.rst
sbin/makefile-extract-documentation
sbin/sdist-test
tests/test_align_algorithms.py
tests/test_align_gap_open.py
tests/test_cigar_utils.py
tests/test_nw.fa
tests/test_nw.py
uta_align/__init__.py
uta_align.egg-info/PKG-INFO
uta_align.egg-info/SOURCES.txt
uta_align.egg-info/dependency_links.txt
uta_align.egg-info/requires.txt
uta_align.egg-info/top_level.txt
uta_align/align/__init__.py
uta_align/align/algorithms.c
uta_align/align/algorithms.pyx
uta_align/align/cigar_utils.c
uta_align/align/cigar_utils.pxd
uta_align/align/cigar_utils.pyx