.readthedocs.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE.txt
README.rst
make_package.sh
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
src/py_cmdtabs/__init__.py
src/py_cmdtabs/cli_manager.py
src/py_cmdtabs/cmdtabs.py
src/py_cmdtabs.egg-info/PKG-INFO
src/py_cmdtabs.egg-info/SOURCES.txt
src/py_cmdtabs.egg-info/dependency_links.txt
src/py_cmdtabs.egg-info/entry_points.txt
src/py_cmdtabs.egg-info/not-zip-safe
src/py_cmdtabs.egg-info/requires.txt
src/py_cmdtabs.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_cli_manager.py
tests/test_cmdtabs_lib.py
tests/test_expanded_methods.py
tests/test_input_parsing.py
tests/test_io.py
tests/data_tests/all_metrics
tests/data_tests/cluster_genes.xlsx
tests/data_tests/cluster_genes_dis_agg
tests/data_tests/cluster_genes_dis_desagg
tests/data_tests/cluster_stats
tests/data_tests/cluster_stats_header
tests/data_tests/disease_cluster
tests/data_tests/disease_cluster_uniq
tests/data_tests/disease_gene
tests/data_tests/filterlist
tests/data_tests/ids2count
tests/data_tests/metric_table
tests/data_tests/tracker
tests/data_tests/ref_output_scripts/TEST_file
tests/data_tests/ref_output_scripts/TEST_file_transposed
tests/data_tests/ref_output_scripts/cluster_genes_dis_AGG
tests/data_tests/ref_output_scripts/cluster_genes_dis_AGG_stdin
tests/data_tests/ref_output_scripts/cluster_genes_dis_DESAGG
tests/data_tests/ref_output_scripts/cluster_genes_dis_DESAGG_stdin
tests/data_tests/ref_output_scripts/cluster_genes_from_excel.txt
tests/data_tests/ref_output_scripts/column_matching_hard
tests/data_tests/ref_output_scripts/column_matching_hard_various_keys
tests/data_tests/ref_output_scripts/column_matching_hard_various_keys_and_every_columns
tests/data_tests/ref_output_scripts/column_matching_hard_various_keys_and_every_columns_header
tests/data_tests/ref_output_scripts/column_matching_hard_various_keys_and_some_columns
tests/data_tests/ref_output_scripts/column_matching_soft
tests/data_tests/ref_output_scripts/column_matching_soft_1_column
tests/data_tests/ref_output_scripts/column_matching_soft_1_column_reverse
tests/data_tests/ref_output_scripts/column_matching_soft_1_column_uniq
tests/data_tests/ref_output_scripts/column_matching_soft_and_every_columns
tests/data_tests/ref_output_scripts/column_matching_soft_and_some_columns
tests/data_tests/ref_output_scripts/ids2count
tests/data_tests/ref_output_scripts/intersect_columns_count
tests/data_tests/ref_output_scripts/intersect_columns_default
tests/data_tests/ref_output_scripts/intersect_columns_default_stdin_a
tests/data_tests/ref_output_scripts/intersect_columns_default_stdin_b
tests/data_tests/ref_output_scripts/intersect_columns_full
tests/data_tests/ref_output_scripts/linked_table
tests/data_tests/ref_output_scripts/linked_table_2
tests/data_tests/ref_output_scripts/linked_table_matches
tests/data_tests/ref_output_scripts/merge_disease_cluster_gene
tests/data_tests/ref_output_scripts/metric_table
tests/data_tests/ref_output_scripts/replaced_name
tests/data_tests/ref_output_scripts/replaced_name_untranslated
tests/data_tests/ref_output_scripts/tag_table
tests/data_tests/ref_output_scripts/tag_table_header
tests/data_tests/ref_output_scripts/transposed_cluster_genes_dis_AGG
tests/data_tests/ref_output_scripts/transposed_cluster_genes_dis_DESAGG
tests/data_tests/ref_output_scripts/transposed_cluster_genes_from_excel.txt
tests/data_tests/ref_output_scripts/transposed_column_matching_hard
tests/data_tests/ref_output_scripts/transposed_intersect_columns_default
tests/data_tests/ref_output_scripts/transposed_linked_table
tests/data_tests/ref_output_scripts/transposed_merge_disease_cluster_gene
tests/data_tests/ref_output_scripts/transposed_metric_table
tests/data_tests/ref_output_scripts/transposed_replaced_name
tests/data_tests/ref_output_scripts/transposed_tag_table
tests/data_tests/transposed/all_metrics
tests/data_tests/transposed/cluster_genes.xlsx
tests/data_tests/transposed/cluster_genes_dis_agg
tests/data_tests/transposed/cluster_genes_dis_desagg
tests/data_tests/transposed/cluster_stats
tests/data_tests/transposed/disease_cluster
tests/data_tests/transposed/disease_cluster_uniq
tests/data_tests/transposed/disease_gene
tests/data_tests/transposed/tranpose_data.py