Metadata-Version: 2.1
Name: scikit-surgerytrackervisualisation
Version: 0.0.1
Summary: Provides a live visualisation of tracking data from a scikit-surgerytracker source
Home-page: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation
Author: Stephen Thompson
Author-email: s.thompson@ucl.ac.uk
License: BSD-3 license
Keywords: medical imaging
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Information Technology
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Description-Content-Type: text/x-rst
Requires-Dist: numpy (>=1.11)
Requires-Dist: vtk
Requires-Dist: PySide2
Requires-Dist: scikit-surgeryvtk (>=0.9.0)
Requires-Dist: scikit-surgeryimage (>=0.6.0)
Requires-Dist: scikit-surgerycore
Requires-Dist: scikit-surgeryutils
Requires-Dist: scikit-surgerynditracker
Requires-Dist: scikit-surgeryarucotracker

scikit-surgerytrackervisualisation
==================================

.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/raw/master/project-icon.png
   :height: 128px
   :width: 128px
   :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation
   :alt: Logo

.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/badges/master/build.svg
   :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/pipelines
   :alt: GitLab-CI test status

.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/badges/master/coverage.svg
    :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/commits/master
    :alt: Test coverage

.. image:: https://readthedocs.org/projects/scikit-surgerytrackervisualisation/badge/?version=latest
    :target: http://scikit-surgerytrackervisualisation.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status



Author: Stephen Thompson

scikit-surgerytrackervisualisation is part of the `SNAPPY`_ software project, developed at the `Wellcome EPSRC Centre for Interventional and Surgical Sciences`_, part of `University College London (UCL)`_.

scikit-surgerytrackervisualisation supports Python 2.7 and Python 3.6.

scikit-surgerytrackervisualisation implements a basic interface for showing tracking output from a SNAPPY tracker. 

::

    python scikit-surgerytrackervisualisation.py 
    python scikit-surgerytrackervisualisation.py --config config.json

Please explore the project structure, and implement your own functionality.

Developing
----------

Cloning
^^^^^^^

You can clone the repository using the following command:

::

    git clone https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation


Running tests
^^^^^^^^^^^^^
Pytest is used for running unit tests:
::

    pip install pytest
    python -m pytest


Linting
^^^^^^^

This code conforms to the PEP8 standard. Pylint can be used to analyse the code:

::

    pip install pylint
    pylint --rcfile=tests/pylintrc scikit-surgerytrackervisualisation


Installing
----------

You can pip install directly from the repository as follows:

::

    pip install git+https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation



Contributing
^^^^^^^^^^^^

Please see the `contributing guidelines`_.


Useful links
^^^^^^^^^^^^

* `Source code repository`_
* `Documentation`_


Licensing and copyright
-----------------------

Copyright 2019 University College London.
scikit-surgerytrackervisualisation is released under the BSD-3 license. Please see the `license file`_ for details.


Acknowledgements
----------------

Supported by `Wellcome`_ and `EPSRC`_.


.. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
.. _`source code repository`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation
.. _`Documentation`: https://scikit-surgerytrackervisualisation.readthedocs.io
.. _`SNAPPY`: https://weisslab.cs.ucl.ac.uk/WEISS/PlatformManagement/SNAPPY/wikis/home
.. _`University College London (UCL)`: http://www.ucl.ac.uk/
.. _`Wellcome`: https://wellcome.ac.uk/
.. _`EPSRC`: https://www.epsrc.ac.uk/
.. _`contributing guidelines`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/blob/master/CONTRIBUTING.rst
.. _`license file`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerytrackervisualisation/blob/master/LICENSE



