LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
bin/batch_cellranger
bin/scabranger
docs/doc_requirements.txt
scab/__init__.py
scab/io.py
scab/pl.py
scab/pp.py
scab/tl.py
scab/ut.py
scab/vdj.py
scab/version.py
scab.egg-info/PKG-INFO
scab.egg-info/SOURCES.txt
scab.egg-info/dependency_links.txt
scab.egg-info/requires.txt
scab.egg-info/top_level.txt
scab/cellranger/README.md
scab/cellranger/__init__.py
scab/cellranger/example.yaml
scab/cellranger/index_sequences.csv
scab/cellranger/scabranger.py
scab/models/__init__.py
scab/models/lineage.py
scab/plots/__init__.py
scab/plots/bar.py
scab/plots/heatmap.py
scab/plots/kde.py
scab/plots/qc.py
scab/plots/ridge.py
scab/plots/scatter.py
scab/plots/umap.py
scab/tests/__init__.py
scab/tests/test_batch_correction.py
scab/tests/test_cellhashes.py
scab/tests/test_embeddings.py
scab/tests/test_io.py
scab/tools/__init__.py
scab/tools/batch_correction.py
scab/tools/cellhashes.py
scab/tools/clonify.py
scab/tools/embeddings.py
scab/tools/similarity.py
scab/tools/specificity.py