[console_scripts]
pyGenClean_baf_lrr_plot = pyGenClean.SexCheck.baf_lrr_plot:safe_main
pyGenClean_check_contamination = pyGenClean.Contamination.contamination:safe_main
pyGenClean_check_ethnicity = pyGenClean.Ethnicity.check_ethnicity:safe_main
pyGenClean_clean_noCall_hetero_snps = pyGenClean.NoCallHetero.clean_noCall_hetero_snps:safe_main
pyGenClean_compare_bim = pyGenClean.PlinkUtils.compare_bim:safe_main
pyGenClean_compare_gold_standard = pyGenClean.Misc.compare_gold_standard:safe_main
pyGenClean_duplicated_samples = pyGenClean.DupSamples.duplicated_samples:safe_main
pyGenClean_duplicated_snps = pyGenClean.DupSNPs.duplicated_snps:safe_main
pyGenClean_find_outliers = pyGenClean.Ethnicity.find_outliers:safe_main
pyGenClean_find_related_samples = pyGenClean.RelatedSamples.find_related_samples:safe_main
pyGenClean_flag_hw = pyGenClean.FlagHW.flag_hw:safe_main
pyGenClean_flag_maf_zero = pyGenClean.FlagMAF.flag_maf_zero:safe_main
pyGenClean_gender_plot = pyGenClean.SexCheck.gender_plot:safe_main
pyGenClean_heterozygosity_plot = pyGenClean.NoCallHetero.heterozygosity_plot:safe_main
pyGenClean_merge_related_samples = pyGenClean.RelatedSamples.merge_related_samples:safe_main
pyGenClean_merge_reports = pyGenClean.LaTeX.merge_reports:safe_main
pyGenClean_plate_bias = pyGenClean.PlateBias.plate_bias:safe_main
pyGenClean_plot_MDS = pyGenClean.PlinkUtils.plot_MDS_standalone:safe_main
pyGenClean_plot_eigenvalues = pyGenClean.Ethnicity.plot_eigenvalues:safe_main
pyGenClean_remove_heterozygous_haploid = pyGenClean.HeteroHap.remove_heterozygous_haploid:safe_main
pyGenClean_sample_missingness = pyGenClean.SampleMissingness.sample_missingness:safe_main
pyGenClean_sex_check = pyGenClean.SexCheck.sex_check:safe_main
pyGenClean_snp_missingness = pyGenClean.MarkerMissingness.snp_missingness:safe_main
pyGenClean_subset_data = pyGenClean.PlinkUtils.subset_data:safe_main
run_pyGenClean = pyGenClean.run_data_clean_up:safe_main

