README.rst
setup.py
ddrage/__init__.py
ddrage/__main__.py
ddrage/barcodes.py
ddrage/distributions.py
ddrage/generation.py
ddrage/initialization.py
ddrage/mutation_model.py
ddrage/output.py
ddrage/plotting.py
ddrage/postprocessors.py
ddrage/rad_locus.py
ddrage/rad_reads.py
ddrage/read_mutation_handling.py
ddrage.egg-info/PKG-INFO
ddrage.egg-info/SOURCES.txt
ddrage.egg-info/dependency_links.txt
ddrage.egg-info/entry_points.txt
ddrage.egg-info/requires.txt
ddrage.egg-info/top_level.txt
ddrage/barcode_handler/__init__.py
ddrage/barcode_handler/barcode_file_parser.py
ddrage/barcode_handler/barcodes/barcodes.txt
ddrage/barcode_handler/barcodes/big.txt
ddrage/barcode_handler/barcodes/full.txt
ddrage/barcode_handler/barcodes/huge.txt
ddrage/barcode_handler/barcodes/small.txt
ddrage/quality_profiles/L100-Q70-A.qmodel.npz
ddrage/quality_profiles/L100-Q70-B.qmodel.npz
ddrage/quality_profiles/L126-Q70.qmodel.npz
ddrage/quality_profiles/L150-Q70.qmodel.npz
ddrage/tools/__init__.py
ddrage/tools/bbd_visualization.py
ddrage/tools/learn_qmodel.py
ddrage/tools/randomize_fastq.py
ddrage/tools/remove_annotation.py
ddrage/tools/split_by_p7_barcode.py