Metadata-Version: 1.0
Name: graftm
Version: 0.5.0
Summary: GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets
Home-page: http://geronimp.github.com/graftM
Author: Joel Boyd, Ben Woodcroft
Author-email: UNKNOWN
License: see LICENSE.txt
Description: # GraftM
        
        ---
        
        ## Overview
        Basically, GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets. If you are after a tool that provide rapid and accurate analysis of short read sequence data, then you'll probably want to give GraftM a try
        
        Head on over to the [GraftM page](http://geronimp.github.io/graftM/) for more general information.
        
        Because GraftM is still being actively developed backwards incompatability may happen in the future, although we will aim to minimise this as much as possible.
        
        ---
        
        ## Installation
        The python code can be installed through pip:
        ```
        pip install graftm
        ```
        ### Dependencies
        GraftM requires a few extra binary applications as well, unfortunately:
        * orfm v. >= 0.2.0 (https://github.com/wwood/OrfM)
        * hmmer v. >= 3.1b1 (http://hmmer.janelia.org/)
        * fxtract (https://github.com/ctSkennerton/fxtract)
        * pplacer v. >= 2.6.32 (http://matsen.fhcrc.org/pplacer/)
        * krona v. >= 2.4 (http://sourceforge.net/p/krona/home/krona/)
        
        ---
        
        ## Help + Contact
        if you have any comments, complaints or reccomendations about GraftM. I'm happy to help, just ask through GitHub.
        A [manual](https://github.com/geronimp/graftM/wiki) is available in the form of the wiki here on github . Please just let us know if you think something might be useful to add to it.
        
        Software by Joel A. Boyd and Ben J. Woodcroft
        Released under GPL3 - see LICENCE.txt for licencing details
        
        ---
        
Platform: UNKNOWN
