Metadata-Version: 1.1
Name: nanoplotter
Version: 0.22.1
Summary: Plotting functions of Oxford Nanopore sequencing data
Home-page: https://github.com/wdecoster/nanoplotter
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description-Content-Type: UNKNOWN
Description: nanoplotter
        ===========
        
        This module provides functions for plotting data extracted from Oxford
        Nanopore sequencing reads and alignments, but some of it's functions can
        also be used for other applications.
        
        |Twitter URL| |install with conda| |Build Status| |Code Health|
        
        FUNCTIONS
        ---------
        
        -  Check if a specified color is a valid matplotlib color
           ``checkvalidColor(color)``
        -  Check if a specified output format is valid
           ``checkvalidFormat(format)``
        -  Create a bivariate plot with dots, hexbins and/or kernel density
           estimates. Also arguments for specifying axis names, color and
           xlim/ylim.
           ``scatter(x, y, names, path, color, format, plots, stat=None, log=False, minvalx=0, minvaly=0)``
        -  Create cumulative yield plot and evaluate read length and quality
           over time ``timePlots(df, path, color, format)``
        -  Create length distribution histogram and density curve
           ``lengthPlots(array, name, path, n50, color, format, log=False)``
        -  Create flowcell physical layout in numpy array ``makeLayout()``
        -  Present the activity (number of reads) per channel on the flowcell as
           a heatmap ``spatialHeatmap(array, title, path, color, format)``
        
        INSTALLATION
        ------------
        
        .. code:: bash
        
            pip install nanoplotter
        
        | or
        | |install with conda|
        
        ::
        
            conda install -c bioconda nanoplotter
        
        STATUS
        ------
        
        |Build Status| |Code Health|
        
        .. |Twitter URL| image:: https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster
           :target: https://twitter.com/wouter_decoster
        .. |install with conda| image:: https://anaconda.org/bioconda/nanoplotter/badges/installer/conda.svg
           :target: https://anaconda.org/bioconda/nanoplotter
        .. |Build Status| image:: https://travis-ci.org/wdecoster/nanoplotter.svg?branch=master
           :target: https://travis-ci.org/wdecoster/nanoplotter
        .. |Code Health| image:: https://landscape.io/github/wdecoster/nanoplotter/master/landscape.svg?style=flat
           :target: https://landscape.io/github/wdecoster/nanoplotter/master
        
Keywords: nanopore sequencing plotting quality control
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
