.coveragerc
.gitignore
.gitmodules
.pre-commit-config.yaml
.readthedocs.yml
AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.txt
README.md
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/workflows/build-docs.yml
.github/workflows/pypi-test.yml
docs/Makefile
docs/authors.md
docs/changelog.md
docs/conf.py
docs/contributing.md
docs/index.md
docs/license.md
docs/readme.md
docs/requirements.txt
docs/_static/.gitignore
src/singler/_Markers.py
src/singler/__init__.py
src/singler/_cpphelpers.py
src/singler/_utils.py
src/singler/annotate_integrated.py
src/singler/annotate_single.py
src/singler/build_integrated_references.py
src/singler/build_single_reference.py
src/singler/classify_integrated_references.py
src/singler/classify_single_reference.py
src/singler/fetch_reference.py
src/singler/get_classic_markers.py
src/singler.egg-info/PKG-INFO
src/singler.egg-info/SOURCES.txt
src/singler.egg-info/dependency_links.txt
src/singler.egg-info/not-zip-safe
src/singler.egg-info/requires.txt
src/singler.egg-info/top_level.txt
src/singler/lib/Markers.cpp
src/singler/lib/bindings.cpp
src/singler/lib/build_integrated_references.cpp
src/singler/lib/build_single_reference.cpp
src/singler/lib/classify_integrated_references.cpp
src/singler/lib/classify_single_reference.cpp
src/singler/lib/find_classic_markers.cpp
src/singler/lib/utils.h
tests/conftest.py
tests/test_annotate_integrated.py
tests/test_annotate_single.py
tests/test_build_integrated_references.py
tests/test_build_single_reference.py
tests/test_classify_integrated_references.py
tests/test_classify_single_reference.py
tests/test_fetch_reference.py
tests/test_get_classic_markers.py
tests/test_utils.py