.readthedocs.yml
.travis.yml
CHANGELOG.rst
CODE_OF_CONDUCT.md
LICENSE
README.md
README.rst
appveyor.yml
environment.yml
setup.py
stdpopsim_example.ipynb
validation.py
.circleci/config.yml
.github/ISSUE_TEMPLATE/bug-report-issue-template.md
.github/ISSUE_TEMPLATE/feature-request-issue-template.md
.github/ISSUE_TEMPLATE/model-qc-issue-template.md
.github/ISSUE_TEMPLATE/species-qc-issue-template.md
docs/Makefile
docs/api.rst
docs/catalog.rst
docs/changelogs.rst
docs/cli_arguments.rst
docs/conf.py
docs/development.rst
docs/docutils.conf
docs/examples.py
docs/index.rst
docs/installation.rst
docs/introduction.rst
docs/tutorial.rst
docs/_ext/speciescatalog.py
docs/_static/do_not_delete
docs/_static/tute-divergence.png
docs/_static/tute-sfs.png
docs/_templates/do_not_delete
docs/parameter_tables/AraTha/African2Epoch_1H18.csv
docs/parameter_tables/AraTha/African3Epoch_1H18.csv
docs/parameter_tables/AraTha/SouthMiddleAtlas_1D17.csv
docs/parameter_tables/DroMel/African3Epoch_1S16.csv
docs/parameter_tables/DroMel/OutOfAfrica_2L06.csv
docs/parameter_tables/HomSap/Africa_1T12.csv
docs/parameter_tables/HomSap/AmericanAdmixture_4B11.csv
docs/parameter_tables/HomSap/AncientEurasia_9K19.csv
docs/parameter_tables/HomSap/AshkSub_7G19.csv
docs/parameter_tables/HomSap/OutOfAfricaArchaicAdmixture_5R19.csv
docs/parameter_tables/HomSap/OutOfAfrica_2T12.csv
docs/parameter_tables/HomSap/OutOfAfrica_3G09.csv
docs/parameter_tables/HomSap/PapuansOutOfAfrica_10J19.csv
docs/parameter_tables/HomSap/Zigzag_1S14.csv
docs/parameter_tables/PonAbe/TwoSpecies_2L11.csv
requirements/conda-minimal.txt
requirements/development.txt
requirements/rtd-conda-environment.yml
stdpopsim/__init__.py
stdpopsim/__main__.py
stdpopsim/_version.py
stdpopsim/cache.py
stdpopsim/citations.py
stdpopsim/cli.py
stdpopsim/engines.py
stdpopsim/genetic_maps.py
stdpopsim/genomes.py
stdpopsim/models.py
stdpopsim/slim_engine.py
stdpopsim/species.py
stdpopsim/utils.py
stdpopsim/warning_categories.py
stdpopsim.egg-info/PKG-INFO
stdpopsim.egg-info/SOURCES.txt
stdpopsim.egg-info/dependency_links.txt
stdpopsim.egg-info/entry_points.txt
stdpopsim.egg-info/requires.txt
stdpopsim.egg-info/top_level.txt
stdpopsim/catalog/AraTha.py
stdpopsim/catalog/CanFam.py
stdpopsim/catalog/DroMel.py
stdpopsim/catalog/EscCol.py
stdpopsim/catalog/HomSap.py
stdpopsim/catalog/PonAbe.py
stdpopsim/catalog/__init__.py
stdpopsim/qc/AraTha.py
stdpopsim/qc/DroMel.py
stdpopsim/qc/HomSap.py
stdpopsim/qc/PonAbe.py
stdpopsim/qc/__init__.py
tests/__init__.py
tests/test_AraTha.py
tests/test_CanFam.py
tests/test_DroMel.py
tests/test_EscCol.py
tests/test_HomSap.py
tests/test_PonAbe.py
tests/test_cache.py
tests/test_citations.py
tests/test_cli.py
tests/test_engines.py
tests/test_genetic_maps.py
tests/test_models.py
tests/test_slim_engine.py
tests/test_species.py
tests/test_utils.py