Metadata-Version: 1.2
Name: struct-lmm
Version: 0.2.1
Summary: Linear mixed model to study multivariate genotype-environment interactions
Home-page: https://github.com/limix/struct-lmm
Maintainer: StructLMM developers
Maintainer-email: casale@ebi.ac.uk
License: Apache License 2.0'
Description: # Struct-lmm
        
        [![Travis](https://img.shields.io/travis/com/limix/struct-lmm.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/struct-lmm) [![Documentation](https://img.shields.io/readthedocs/struct-lmm.svg?style=flat-square&version=stable)](https://struct-lmm.readthedocs.io/)
        
        Structured Linear Mixed Model (StructLMM) is a computationally efficient method to test for and characterize loci that interact with multiple environments [1].
        
        This a standalone module that implements the basic functionalities of StructLMM.
        However, we recommend using StructLMM using [LIMIX2](https://limix.readthedocs.io/en/2.0.0/index.html) as this additionally implements:
        
        - multiple methods for GWAS;
        - methods to characterize GxE at specific variants;
        - command line interface.
        
        [1] Moore R, Casale FP, Bonder MJ, Horta D, Franke L, Barroso I, Stegle O, BIOS Consortium. A linear mixed model approach to study multivariate gene-environment interactions. bioRxiv. 2018 Jan 1:270611.
        
        ## Install
        
        From terminal, it can be installed using [pip](https://pypi.python.org/pypi/pip):
        
        ```bash
        pip install struct-lmm
        ```
        
        ## Documentation
        
        The public interface and a quick start in python are available at
        [http://struct-lmm.readthedocs.io/](http://struct-lmm.readthedocs.io/).
        
        ## Problems
        
        If you encounter any problem, please, consider submitting a [new issue](https://github.com/limix/struct-lmm/issues/new).
        
        ## Authors
        
        - **Francesco Paolo Casale** - [https://github.com/fpcasale](https://github.com/fpcasale)
        - **Danilo Horta** - [https://github.com/horta](https://github.com/horta)
        - **Rachel Moore** - [https://github.com/rm18](https://github.com/rm18)
        - **Oliver Stegle** - [https://github.com/ostegle](https://github.com/ostegle)
        
        ## License
        
        This project is licensed under the Apache License (Version 2.0, January 2004) -
        see the [LICENSE](LICENSE) file for details
        
Platform: UNKNOWN
