Metadata-Version: 1.1
Name: dreamtools
Version: 0.0.3
Summary: Scoring functions for the dream / sage challenges
Home-page: ['https://github.com/dreamtools/dreamtools']
Author: Thomas Cokelaer
Author-email: cokelaer@gmail.com
License: BSD
Download-URL: ['http://pypi.python.org/pypi/dreamtools']
Description: DreamTools
        ==========
        Overview
        ---------
        
        **dreamtools** aims at sharing code related to `DREAM <http://dreamchallenges.org>`_ challenges.
        
        This repository is meant to contain (small) data sets and codes related to the scoring of the 
        `DREAM challenges <http://dreamchallenges.org>`_. 
        
        It was created at the time of DREAM8-9 and contains only Dream8 HPN challenge code for now. 
        Note however that **dreamtools** contains information about DREAM6-7 (parameter estimation). 
        More code/scripts about other challenges will be added later. 
        
        The main goals are:
        
        #. provide user a scoring function for the challenges
        #. provide developer a place to share-reuse code used before/during/after the challenges
        
        dreamtools-scoring executable
        -------------------------------
        
        For users, **dreamtools** provide one executable called **dreamtools-scoring**, which should be installed automatically
        when installing dreamtools. Knowing the name of the challenge (and possibly sub-challenge), it works as  follows::
        
            dreamtools-scoring --challenge d8c1 --sub-challenge sc1a --submission ~/alphabeta-Network.zip
            
        It prints some information and the score of the submision for instance for the example above::
        
             Solution for alphabeta-Network.zip in challenge d8c1 (sub-challenge sc1a) is :
             AUROC: 0.781937275711
        
        Scoring functions available so far:
        
        
        * Dream8 HPN (D8C1) sub challenges named sc1a, sc1b, sc2a, sc2b. 
          See `Synapse page <https://www.synapse.org/#!Synapse:syn1720047>`_ for details
        
        
        Installation
        ---------------
        
        ::
        
            pip install dreamtools
            
            
        
        
        
Keywords: scoring,dream,roc,leaderboard
Platform: Linux
Platform: Unix
Platform: MacOsX
Platform: Windows
Classifier: Development Status :: 1 - Planning
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Physics
