.gitignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
docs/gfa_split.png
docs/gfa_tangled.png
src/GraphUnzip.egg-info/PKG-INFO
src/GraphUnzip.egg-info/SOURCES.txt
src/GraphUnzip.egg-info/dependency_links.txt
src/GraphUnzip.egg-info/entry_points.txt
src/GraphUnzip.egg-info/requires.txt
src/GraphUnzip.egg-info/top_level.txt
src/graphunzip/__init__.py
src/graphunzip/_version.py
src/graphunzip/analyse_HiC.py
src/graphunzip/analyse_coverage_HiC.py
src/graphunzip/arg_helpers.py
src/graphunzip/check_phasing.py
src/graphunzip/clean_graph.py
src/graphunzip/determine_multiplicity.py
src/graphunzip/docopt.py
src/graphunzip/finish_untangling.py
src/graphunzip/graphunzip.py
src/graphunzip/input_output.py
src/graphunzip/interaction_between_contigs.py
src/graphunzip/run_submodules.py
src/graphunzip/segment.py
src/graphunzip/solve_ambiguities.py
src/graphunzip/solve_with_HiC.py
src/graphunzip/solve_with_long_reads.py
src/graphunzip/tests.py
src/graphunzip/transform_gfa.py
src/graphunzip/trash.py
src/graphunzip/pybam/LICENSE
src/graphunzip/pybam/README.md
src/graphunzip/pybam/pybam.py