anndata>=0.6.15
matplotlib>=3.0.0
pandas>=0.21
scipy
seaborn
h5py
tables
tqdm
scikit-learn>=0.19.1
statsmodels
patsy
networkx
natsort
joblib
numba>=0.41.0
umap-learn>=0.3.0

[bbknn]
bbknn

[doc]
sphinx
sphinx_rtd_theme
sphinx_autodoc_typehints
scanpydoc

[leiden]
python-igraph
leidenalg

[louvain]
python-igraph
louvain>=0.6

[test]
pytest>=3.9
dask[array]
zappy
zarr
