MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
versioneer.py
scanpy/__init__.py
scanpy/__main__.py
scanpy/_exporting.py
scanpy/_settings.py
scanpy/_version.py
scanpy/cli.py
scanpy/logging.py
scanpy/readwrite.py
scanpy/utils.py
scanpy.egg-info/PKG-INFO
scanpy.egg-info/SOURCES.txt
scanpy.egg-info/dependency_links.txt
scanpy.egg-info/entry_points.txt
scanpy.egg-info/not-zip-safe
scanpy.egg-info/requires.txt
scanpy.egg-info/top_level.txt
scanpy/api/__init__.py
scanpy/api/datasets.py
scanpy/api/export_to.py
scanpy/api/logging.py
scanpy/api/pl.py
scanpy/api/pp.py
scanpy/api/queries.py
scanpy/api/tl.py
scanpy/datasets/__init__.py
scanpy/datasets/_ebi_expression_atlas.py
scanpy/datasets/krumsiek11.txt
scanpy/datasets/toggleswitch.txt
scanpy/external/__init__.py
scanpy/external/pl.py
scanpy/external/pp.py
scanpy/external/tl.py
scanpy/external/_tools/__init__.py
scanpy/external/_tools/_palantir.py
scanpy/external/rtools/__init__.py
scanpy/external/rtools/mnn_correct.py
scanpy/neighbors/__init__.py
scanpy/plotting/__init__.py
scanpy/plotting/_anndata.py
scanpy/plotting/_docs.py
scanpy/plotting/_preprocessing.py
scanpy/plotting/_qc.py
scanpy/plotting/_rcmod.py
scanpy/plotting/_top_genes_visual.py
scanpy/plotting/_utils.py
scanpy/plotting/palettes.py
scanpy/plotting/_tools/__init__.py
scanpy/plotting/_tools/paga.py
scanpy/plotting/_tools/scatterplots.py
scanpy/preprocessing/__init__.py
scanpy/preprocessing/_bbknn.py
scanpy/preprocessing/_combat.py
scanpy/preprocessing/_dca.py
scanpy/preprocessing/_distributed.py
scanpy/preprocessing/_docs.py
scanpy/preprocessing/_highly_variable_genes.py
scanpy/preprocessing/_magic.py
scanpy/preprocessing/_mnn_correct.py
scanpy/preprocessing/_normalization.py
scanpy/preprocessing/_qc.py
scanpy/preprocessing/_recipes.py
scanpy/preprocessing/_simple.py
scanpy/preprocessing/_utils.py
scanpy/preprocessing/_deprecated/__init__.py
scanpy/preprocessing/_deprecated/highly_variable_genes.py
scanpy/queries/__init__.py
scanpy/sim_models/__init__.py
scanpy/sim_models/krumsiek11.txt
scanpy/sim_models/krumsiek11_params.txt
scanpy/sim_models/toggleswitch.txt
scanpy/sim_models/toggleswitch_params.txt
scanpy/tools/__init__.py
scanpy/tools/_dendrogram.py
scanpy/tools/_diffmap.py
scanpy/tools/_dpt.py
scanpy/tools/_draw_graph.py
scanpy/tools/_embedding_density.py
scanpy/tools/_leiden.py
scanpy/tools/_louvain.py
scanpy/tools/_marker_gene_overlap.py
scanpy/tools/_paga.py
scanpy/tools/_pca.py
scanpy/tools/_phate.py
scanpy/tools/_phenograph.py
scanpy/tools/_pypairs.py
scanpy/tools/_rank_genes_groups.py
scanpy/tools/_rna_velocity.py
scanpy/tools/_score_genes.py
scanpy/tools/_sim.py
scanpy/tools/_top_genes.py
scanpy/tools/_tsne.py
scanpy/tools/_tsne_fix.py
scanpy/tools/_umap.py
scanpy/tools/_utils.py
scanpy/tools/_utils_clustering.py