Welcome to modlAMP's documentation!
===================================

**modlAMP**

**Authors:** Alex Müller, Gisela Gabernet

**Copyright:** (c) 2016 - 2017 ETH Zurich, Switzerland; Alex Müller, Gisela Gabernet, Gisbert Schneider `(modlab)
<http://www.cadd.ethz.ch>`_.

This is a **Python package** (for Python 2.7) that was designed for working with peptides, proteins or any
sequence of natural amino acids. It incorporates several modules, like sequence generation (module ``sequences``),
sequence library analysis (module ``analysis``) or descriptor calculation (module ``descriptors``). For
basic instructions on how to use the package, check the `README <readme.html>`_ or the `example script <examplescript
.html>`_.

.. toctree::
   :caption: The package has the following contents:
   :maxdepth: 3
   :numbered:

   readme
   modlamp
   examplescript
   license
   todo

**If you use modlAMP in a scientific publication, we would appreciate citations to the following paper:**

Müller A. T. *et al.* (2017) modlAMP: Python for anitmicrobial peptides, *Bioinformatics*, DOI:
`10.1093/bioinformatics/btx285 <https://doi.org/10.1093/bioinformatics/btx285>`_.

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
