README.md
setup.py
src/pdm_utils/__init__.py
src/pdm_utils/pdm.py
src/pdm_utils.egg-info/PKG-INFO
src/pdm_utils.egg-info/SOURCES.txt
src/pdm_utils.egg-info/dependency_links.txt
src/pdm_utils.egg-info/top_level.txt
src/pdm_utils/classes/__init__.py
src/pdm_utils/classes/bundle.py
src/pdm_utils/classes/cds.py
src/pdm_utils/classes/cdspair.py
src/pdm_utils/classes/eval.py
src/pdm_utils/classes/genome.py
src/pdm_utils/classes/genomepair.py
src/pdm_utils/classes/mmseqsphameratorhandler.py
src/pdm_utils/classes/mysqlconnectionhandler.py
src/pdm_utils/classes/randomfieldupdatehandler.py
src/pdm_utils/classes/source.py
src/pdm_utils/classes/ticket.py
src/pdm_utils/classes/trna.py
src/pdm_utils/constants/__init__.py
src/pdm_utils/constants/constants.py
src/pdm_utils/functions/__init__.py
src/pdm_utils/functions/basic.py
src/pdm_utils/functions/flat_files.py
src/pdm_utils/functions/misc.py
src/pdm_utils/functions/phagesdb.py
src/pdm_utils/functions/phamerator.py
src/pdm_utils/functions/tickets.py
src/pdm_utils/pipelines/__init__.py
src/pdm_utils/pipelines/data_retrieval/__init__.py
src/pdm_utils/pipelines/data_retrieval/retrieve_database_updates.py
src/pdm_utils/pipelines/db_compare/__init__.py
src/pdm_utils/pipelines/db_export/__init__.py
src/pdm_utils/pipelines/db_import/__init__.py
src/pdm_utils/pipelines/db_import/evaluate.py
src/pdm_utils/pipelines/db_import/import_cli.py
src/pdm_utils/pipelines/db_import/import_main.py
src/pdm_utils/pipelines/db_import/test.py
src/pdm_utils/pipelines/db_update/__init__.py
src/pdm_utils/pipelines/db_update/update_field.py