Metadata-Version: 2.1
Name: picturedrocks
Version: 0.3.1
Summary: Single Cell RNA Sequencing Marker Selection Package
Home-page: https://github.com/umangv/picturedrocks
Author: Umang Varma, Anna Gilbert
Author-email: uvarma@umich.edu
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Requires-Python: ~=3.6
Description-Content-Type: text/markdown
Requires-Dist: anndata
Requires-Dist: colorlover
Requires-Dist: h5py
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: plotly
Requires-Dist: scanpy
Requires-Dist: scipy
Requires-Dist: umap-learn

# PicturedRocks Single Cell Analysis Tool

[![Build Status](https://travis-ci.com/umangv/picturedrocks.svg?branch=master)](https://travis-ci.com/umangv/picturedrocks)
[![Documentation Status](https://readthedocs.org/projects/picturedrocks/badge/?version=latest)](https://picturedrocks.readthedocs.io/en/latest/?badge=latest)

PicturedRocks is a python package that implements information-theoretic feature selection algorithms. 

## Usage

To install the latest GitHub version of PicturedRocks, do an "editable" installation of PicturedRocks:
```
git clone git@github.com:umangv/picturedrocks.git
cd picturedrocks
pip install -e .
```

PicturedRocks in compatible with `scanpy` and uses its `AnnData` objects. Most methods require cluster labels to be loaded. 

```python
from picturedrocks.read import read_clusts, process_clusts
adata = read_clusts(adata, "clust_labels.csv")
adata = process_clusts(adata)
```

More detailed information can be found on the [online documentation](https://picturedrocks.rtfd.io/).

## Code Style

Pull requests are welcome. Please use [numpy-style docstrings](https://sphinxcontrib-napoleon.rtfd.io/) and format your code with [black](https://black.rtfd.io).

## Copyright

Copyright © 2017-2019 Umang Varma, Anna Gilbert

PicturedRocks is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

PicturedRocks is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with PicturedRocks.  If not, see <http://www.gnu.org/licenses/>.


