LICENSE
MANIFEST.in
README.md
setup.py
lib/gamtools/__init__.py
lib/gamtools/bias.py
lib/gamtools/call_windows.py
lib/gamtools/compaction.py
lib/gamtools/cosegregation.py
lib/gamtools/cosegregation_internal.c
lib/gamtools/count_tables.py
lib/gamtools/enrichment.py
lib/gamtools/main.py
lib/gamtools/matrix.py
lib/gamtools/mirnylib_numutils.py
lib/gamtools/mirnylib_numutils_internal.c
lib/gamtools/npmi.py
lib/gamtools/permutation.py
lib/gamtools/pipeline.py
lib/gamtools/radial_position.py
lib/gamtools/resolution.py
lib/gamtools/segregation.py
lib/gamtools/select_samples.py
lib/gamtools/utils.py
lib/gamtools.egg-info/PKG-INFO
lib/gamtools.egg-info/SOURCES.txt
lib/gamtools.egg-info/dependency_links.txt
lib/gamtools.egg-info/entry_points.txt
lib/gamtools.egg-info/requires.txt
lib/gamtools.egg-info/top_level.txt
lib/gamtools/data/examples/example_segregation.table
lib/gamtools/data/examples/qc_parameters.example.cfg
lib/gamtools/data/scripts/mapping_stats.sh
lib/gamtools/qc/__init__.py
lib/gamtools/qc/fastqc.py
lib/gamtools/qc/merge.py
lib/gamtools/qc/pass_qc.py
lib/gamtools/qc/screen.py
lib/gamtools/qc/segregation.py
lib/gamtools/tests/test_bias.py
lib/gamtools/tests/test_call_windows.py
lib/gamtools/tests/test_cosegregation.py
lib/gamtools/tests/test_dependencies.py
lib/gamtools/tests/test_gamtools.py
lib/gamtools/tests/test_installation.py
lib/gamtools/tests/test_matrix.py
lib/gamtools/tests/test_npmi.py
lib/gamtools/tests/test_parser.py
lib/gamtools/tests/test_permutation.py
lib/gamtools/tests/test_qc_merge.py
lib/gamtools/tests/test_resolution.py
lib/gamtools/tests/test_segregation.py