MANIFEST.in
README
limix_main.py
limix_script.py
setup.py
setup_freeze.py
./External/Eigen/src/Cholesky/LDLT.h
./External/Eigen/src/Cholesky/LLT.h
./External/Eigen/src/Cholesky/LLT_MKL.h
./External/Eigen/src/CholmodSupport/CholmodSupport.h
./External/Eigen/src/Core/Array.h
./External/Eigen/src/Core/ArrayBase.h
./External/Eigen/src/Core/ArrayWrapper.h
./External/Eigen/src/Core/Assign.h
./External/Eigen/src/Core/Assign_MKL.h
./External/Eigen/src/Core/BandMatrix.h
./External/Eigen/src/Core/Block.h
./External/Eigen/src/Core/BooleanRedux.h
./External/Eigen/src/Core/CommaInitializer.h
./External/Eigen/src/Core/CoreIterators.h
./External/Eigen/src/Core/CwiseBinaryOp.h
./External/Eigen/src/Core/CwiseNullaryOp.h
./External/Eigen/src/Core/CwiseUnaryOp.h
./External/Eigen/src/Core/CwiseUnaryView.h
./External/Eigen/src/Core/DenseBase.h
./External/Eigen/src/Core/DenseCoeffsBase.h
./External/Eigen/src/Core/DenseStorage.h
./External/Eigen/src/Core/Diagonal.h
./External/Eigen/src/Core/DiagonalMatrix.h
./External/Eigen/src/Core/DiagonalProduct.h
./External/Eigen/src/Core/Dot.h
./External/Eigen/src/Core/EigenBase.h
./External/Eigen/src/Core/Flagged.h
./External/Eigen/src/Core/ForceAlignedAccess.h
./External/Eigen/src/Core/Functors.h
./External/Eigen/src/Core/Fuzzy.h
./External/Eigen/src/Core/GeneralProduct.h
./External/Eigen/src/Core/GenericPacketMath.h
./External/Eigen/src/Core/GlobalFunctions.h
./External/Eigen/src/Core/IO.h
./External/Eigen/src/Core/Map.h
./External/Eigen/src/Core/MapBase.h
./External/Eigen/src/Core/MathFunctions.h
./External/Eigen/src/Core/Matrix.h
./External/Eigen/src/Core/MatrixBase.h
./External/Eigen/src/Core/NestByValue.h
./External/Eigen/src/Core/NoAlias.h
./External/Eigen/src/Core/NumTraits.h
./External/Eigen/src/Core/PermutationMatrix.h
./External/Eigen/src/Core/PlainObjectBase.h
./External/Eigen/src/Core/ProductBase.h
./External/Eigen/src/Core/Random.h
./External/Eigen/src/Core/Redux.h
./External/Eigen/src/Core/Ref.h
./External/Eigen/src/Core/Replicate.h
./External/Eigen/src/Core/ReturnByValue.h
./External/Eigen/src/Core/Reverse.h
./External/Eigen/src/Core/Select.h
./External/Eigen/src/Core/SelfAdjointView.h
./External/Eigen/src/Core/SelfCwiseBinaryOp.h
./External/Eigen/src/Core/SolveTriangular.h
./External/Eigen/src/Core/StableNorm.h
./External/Eigen/src/Core/Stride.h
./External/Eigen/src/Core/Swap.h
./External/Eigen/src/Core/Transpose.h
./External/Eigen/src/Core/Transpositions.h
./External/Eigen/src/Core/TriangularMatrix.h
./External/Eigen/src/Core/VectorBlock.h
./External/Eigen/src/Core/VectorwiseOp.h
./External/Eigen/src/Core/Visitor.h
./External/Eigen/src/Core/arch/AltiVec/Complex.h
./External/Eigen/src/Core/arch/AltiVec/PacketMath.h
./External/Eigen/src/Core/arch/Default/Settings.h
./External/Eigen/src/Core/arch/NEON/Complex.h
./External/Eigen/src/Core/arch/NEON/PacketMath.h
./External/Eigen/src/Core/arch/SSE/Complex.h
./External/Eigen/src/Core/arch/SSE/MathFunctions.h
./External/Eigen/src/Core/arch/SSE/PacketMath.h
./External/Eigen/src/Core/products/CoeffBasedProduct.h
./External/Eigen/src/Core/products/GeneralBlockPanelKernel.h
./External/Eigen/src/Core/products/GeneralMatrixMatrix.h
./External/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
./External/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h
./External/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h
./External/Eigen/src/Core/products/GeneralMatrixVector.h
./External/Eigen/src/Core/products/GeneralMatrixVector_MKL.h
./External/Eigen/src/Core/products/Parallelizer.h
./External/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
./External/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h
./External/Eigen/src/Core/products/SelfadjointMatrixVector.h
./External/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h
./External/Eigen/src/Core/products/SelfadjointProduct.h
./External/Eigen/src/Core/products/SelfadjointRank2Update.h
./External/Eigen/src/Core/products/TriangularMatrixMatrix.h
./External/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h
./External/Eigen/src/Core/products/TriangularMatrixVector.h
./External/Eigen/src/Core/products/TriangularMatrixVector_MKL.h
./External/Eigen/src/Core/products/TriangularSolverMatrix.h
./External/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h
./External/Eigen/src/Core/products/TriangularSolverVector.h
./External/Eigen/src/Core/util/BlasUtil.h
./External/Eigen/src/Core/util/Constants.h
./External/Eigen/src/Core/util/DisableStupidWarnings.h
./External/Eigen/src/Core/util/ForwardDeclarations.h
./External/Eigen/src/Core/util/MKL_support.h
./External/Eigen/src/Core/util/Macros.h
./External/Eigen/src/Core/util/Memory.h
./External/Eigen/src/Core/util/Meta.h
./External/Eigen/src/Core/util/NonMPL2.h
./External/Eigen/src/Core/util/ReenableStupidWarnings.h
./External/Eigen/src/Core/util/StaticAssert.h
./External/Eigen/src/Core/util/XprHelper.h
./External/Eigen/src/Eigen2Support/Block.h
./External/Eigen/src/Eigen2Support/Cwise.h
./External/Eigen/src/Eigen2Support/CwiseOperators.h
./External/Eigen/src/Eigen2Support/LU.h
./External/Eigen/src/Eigen2Support/Lazy.h
./External/Eigen/src/Eigen2Support/LeastSquares.h
./External/Eigen/src/Eigen2Support/Macros.h
./External/Eigen/src/Eigen2Support/MathFunctions.h
./External/Eigen/src/Eigen2Support/Memory.h
./External/Eigen/src/Eigen2Support/Meta.h
./External/Eigen/src/Eigen2Support/Minor.h
./External/Eigen/src/Eigen2Support/QR.h
./External/Eigen/src/Eigen2Support/SVD.h
./External/Eigen/src/Eigen2Support/TriangularSolver.h
./External/Eigen/src/Eigen2Support/VectorBlock.h
./External/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
./External/Eigen/src/Eigen2Support/Geometry/All.h
./External/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
./External/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
./External/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
./External/Eigen/src/Eigen2Support/Geometry/Quaternion.h
./External/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
./External/Eigen/src/Eigen2Support/Geometry/RotationBase.h
./External/Eigen/src/Eigen2Support/Geometry/Scaling.h
./External/Eigen/src/Eigen2Support/Geometry/Transform.h
./External/Eigen/src/Eigen2Support/Geometry/Translation.h
./External/Eigen/src/Eigenvalues/ComplexEigenSolver.h
./External/Eigen/src/Eigenvalues/ComplexSchur.h
./External/Eigen/src/Eigenvalues/ComplexSchur_MKL.h
./External/Eigen/src/Eigenvalues/EigenSolver.h
./External/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
./External/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
./External/Eigen/src/Eigenvalues/HessenbergDecomposition.h
./External/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
./External/Eigen/src/Eigenvalues/RealQZ.h
./External/Eigen/src/Eigenvalues/RealSchur.h
./External/Eigen/src/Eigenvalues/RealSchur_MKL.h
./External/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
./External/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h
./External/Eigen/src/Eigenvalues/Tridiagonalization.h
./External/Eigen/src/Geometry/AlignedBox.h
./External/Eigen/src/Geometry/AngleAxis.h
./External/Eigen/src/Geometry/EulerAngles.h
./External/Eigen/src/Geometry/Homogeneous.h
./External/Eigen/src/Geometry/Hyperplane.h
./External/Eigen/src/Geometry/OrthoMethods.h
./External/Eigen/src/Geometry/ParametrizedLine.h
./External/Eigen/src/Geometry/Quaternion.h
./External/Eigen/src/Geometry/Rotation2D.h
./External/Eigen/src/Geometry/RotationBase.h
./External/Eigen/src/Geometry/Scaling.h
./External/Eigen/src/Geometry/Transform.h
./External/Eigen/src/Geometry/Translation.h
./External/Eigen/src/Geometry/Umeyama.h
./External/Eigen/src/Geometry/arch/Geometry_SSE.h
./External/Eigen/src/Householder/BlockHouseholder.h
./External/Eigen/src/Householder/Householder.h
./External/Eigen/src/Householder/HouseholderSequence.h
./External/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
./External/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
./External/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
./External/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
./External/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
./External/Eigen/src/Jacobi/Jacobi.h
./External/Eigen/src/LU/Determinant.h
./External/Eigen/src/LU/FullPivLU.h
./External/Eigen/src/LU/Inverse.h
./External/Eigen/src/LU/PartialPivLU.h
./External/Eigen/src/LU/PartialPivLU_MKL.h
./External/Eigen/src/LU/arch/Inverse_SSE.h
./External/Eigen/src/MetisSupport/MetisSupport.h
./External/Eigen/src/OrderingMethods/Amd.h
./External/Eigen/src/OrderingMethods/Eigen_Colamd.h
./External/Eigen/src/OrderingMethods/Ordering.h
./External/Eigen/src/PaStiXSupport/PaStiXSupport.h
./External/Eigen/src/PardisoSupport/PardisoSupport.h
./External/Eigen/src/QR/ColPivHouseholderQR.h
./External/Eigen/src/QR/ColPivHouseholderQR_MKL.h
./External/Eigen/src/QR/FullPivHouseholderQR.h
./External/Eigen/src/QR/HouseholderQR.h
./External/Eigen/src/QR/HouseholderQR_MKL.h
./External/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
./External/Eigen/src/SVD/JacobiSVD.h
./External/Eigen/src/SVD/JacobiSVD_MKL.h
./External/Eigen/src/SVD/UpperBidiagonalization.h
./External/Eigen/src/SparseCholesky/SimplicialCholesky.h
./External/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
./External/Eigen/src/SparseCore/AmbiVector.h
./External/Eigen/src/SparseCore/CompressedStorage.h
./External/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
./External/Eigen/src/SparseCore/MappedSparseMatrix.h
./External/Eigen/src/SparseCore/SparseBlock.h
./External/Eigen/src/SparseCore/SparseColEtree.h
./External/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
./External/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
./External/Eigen/src/SparseCore/SparseDenseProduct.h
./External/Eigen/src/SparseCore/SparseDiagonalProduct.h
./External/Eigen/src/SparseCore/SparseDot.h
./External/Eigen/src/SparseCore/SparseFuzzy.h
./External/Eigen/src/SparseCore/SparseMatrix.h
./External/Eigen/src/SparseCore/SparseMatrixBase.h
./External/Eigen/src/SparseCore/SparsePermutation.h
./External/Eigen/src/SparseCore/SparseProduct.h
./External/Eigen/src/SparseCore/SparseRedux.h
./External/Eigen/src/SparseCore/SparseSelfAdjointView.h
./External/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
./External/Eigen/src/SparseCore/SparseTranspose.h
./External/Eigen/src/SparseCore/SparseTriangularView.h
./External/Eigen/src/SparseCore/SparseUtil.h
./External/Eigen/src/SparseCore/SparseVector.h
./External/Eigen/src/SparseCore/SparseView.h
./External/Eigen/src/SparseCore/TriangularSolver.h
./External/Eigen/src/SparseLU/SparseLU.h
./External/Eigen/src/SparseLU/SparseLUImpl.h
./External/Eigen/src/SparseLU/SparseLU_Memory.h
./External/Eigen/src/SparseLU/SparseLU_Structs.h
./External/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
./External/Eigen/src/SparseLU/SparseLU_Utils.h
./External/Eigen/src/SparseLU/SparseLU_column_bmod.h
./External/Eigen/src/SparseLU/SparseLU_column_dfs.h
./External/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
./External/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
./External/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
./External/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
./External/Eigen/src/SparseLU/SparseLU_panel_bmod.h
./External/Eigen/src/SparseLU/SparseLU_panel_dfs.h
./External/Eigen/src/SparseLU/SparseLU_pivotL.h
./External/Eigen/src/SparseLU/SparseLU_pruneL.h
./External/Eigen/src/SparseLU/SparseLU_relax_snode.h
./External/Eigen/src/SparseQR/SparseQR.h
./External/Eigen/src/StlSupport/StdDeque.h
./External/Eigen/src/StlSupport/StdList.h
./External/Eigen/src/StlSupport/StdVector.h
./External/Eigen/src/StlSupport/details.h
./External/Eigen/src/SuperLUSupport/SuperLUSupport.h
./External/Eigen/src/UmfPackSupport/UmfPackSupport.h
./External/Eigen/src/misc/Image.h
./External/Eigen/src/misc/Kernel.h
./External/Eigen/src/misc/Solve.h
./External/Eigen/src/misc/SparseSolve.h
./External/Eigen/src/misc/blas.h
./External/Eigen/src/plugins/ArrayCwiseBinaryOps.h
./External/Eigen/src/plugins/ArrayCwiseUnaryOps.h
./External/Eigen/src/plugins/BlockMethods.h
./External/Eigen/src/plugins/CommonCwiseBinaryOps.h
./External/Eigen/src/plugins/CommonCwiseUnaryOps.h
./External/Eigen/src/plugins/MatrixCwiseBinaryOps.h
./External/Eigen/src/plugins/MatrixCwiseUnaryOps.h
./External/msinttypes-r26/inttypes.h
./External/msinttypes-r26/stdint.h
./External/nlopt/config.h
./External/nlopt/api/deprecated.c
./External/nlopt/api/deprecated.cpp
./External/nlopt/api/f77api.c
./External/nlopt/api/f77api.cpp
./External/nlopt/api/f77funcs.h
./External/nlopt/api/f77funcs_.h
./External/nlopt/api/general.c
./External/nlopt/api/general.cpp
./External/nlopt/api/nlopt-internal.h
./External/nlopt/api/nlopt.h
./External/nlopt/api/optimize.c
./External/nlopt/api/optimize.cpp
./External/nlopt/api/options.c
./External/nlopt/api/options.cpp
./External/nlopt/auglag/auglag.c
./External/nlopt/auglag/auglag.cpp
./External/nlopt/auglag/auglag.h
./External/nlopt/bobyqa/bobyqa.c
./External/nlopt/bobyqa/bobyqa.cpp
./External/nlopt/bobyqa/bobyqa.h
./External/nlopt/cdirect/cdirect.c
./External/nlopt/cdirect/cdirect.cpp
./External/nlopt/cdirect/cdirect.h
./External/nlopt/cdirect/hybrid.c
./External/nlopt/cdirect/hybrid.cpp
./External/nlopt/cobyla/cobyla.c
./External/nlopt/cobyla/cobyla.cpp
./External/nlopt/cobyla/cobyla.h
./External/nlopt/cquad/cquad.h
./External/nlopt/crs/crs.c
./External/nlopt/crs/crs.cpp
./External/nlopt/crs/crs.h
./External/nlopt/direct/DIRect.c
./External/nlopt/direct/DIRect.cpp
./External/nlopt/direct/DIRserial.c
./External/nlopt/direct/DIRserial.cpp
./External/nlopt/direct/DIRsubrout.c
./External/nlopt/direct/DIRsubrout.cpp
./External/nlopt/direct/direct-internal.h
./External/nlopt/direct/direct.h
./External/nlopt/direct/direct_wrap.c
./External/nlopt/direct/direct_wrap.cpp
./External/nlopt/esch/esch.c
./External/nlopt/esch/esch.cpp
./External/nlopt/esch/esch.h
./External/nlopt/isres/isres.c
./External/nlopt/isres/isres.cpp
./External/nlopt/isres/isres.h
./External/nlopt/luksan/luksan.h
./External/nlopt/luksan/mssubs.c
./External/nlopt/luksan/mssubs.cpp
./External/nlopt/luksan/plip.c
./External/nlopt/luksan/plip.cpp
./External/nlopt/luksan/plis.c
./External/nlopt/luksan/plis.cpp
./External/nlopt/luksan/pnet.c
./External/nlopt/luksan/pnet.cpp
./External/nlopt/luksan/pssubs.c
./External/nlopt/luksan/pssubs.cpp
./External/nlopt/mlsl/mlsl.c
./External/nlopt/mlsl/mlsl.cpp
./External/nlopt/mlsl/mlsl.h
./External/nlopt/mma/ccsa_quadratic.c
./External/nlopt/mma/ccsa_quadratic.cpp
./External/nlopt/mma/mma.c
./External/nlopt/mma/mma.cpp
./External/nlopt/mma/mma.h
./External/nlopt/neldermead/neldermead.h
./External/nlopt/neldermead/nldrmd.c
./External/nlopt/neldermead/nldrmd.cpp
./External/nlopt/neldermead/sbplx.c
./External/nlopt/neldermead/sbplx.cpp
./External/nlopt/newuoa/newuoa.c
./External/nlopt/newuoa/newuoa.cpp
./External/nlopt/newuoa/newuoa.h
./External/nlopt/praxis/praxis.c
./External/nlopt/praxis/praxis.cpp
./External/nlopt/praxis/praxis.h
./External/nlopt/slsqp/slsqp.c
./External/nlopt/slsqp/slsqp.cpp
./External/nlopt/slsqp/slsqp.h
./External/nlopt/stogo/global.cc
./External/nlopt/stogo/global.h
./External/nlopt/stogo/linalg.cc
./External/nlopt/stogo/linalg.h
./External/nlopt/stogo/local.cc
./External/nlopt/stogo/local.h
./External/nlopt/stogo/rosen.h
./External/nlopt/stogo/stogo.cc
./External/nlopt/stogo/stogo.h
./External/nlopt/stogo/stogo_config.h
./External/nlopt/stogo/testfun.h
./External/nlopt/stogo/tools.cc
./External/nlopt/stogo/tools.h
./External/nlopt/subplex/subplex.h
./External/nlopt/test/testfuncs.h
./External/nlopt/util/mt19937ar.c
./External/nlopt/util/mt19937ar.cpp
./External/nlopt/util/nlopt-util.h
./External/nlopt/util/qsort_r.c
./External/nlopt/util/qsort_r.cpp
./External/nlopt/util/redblack.c
./External/nlopt/util/redblack.cpp
./External/nlopt/util/redblack.h
./External/nlopt/util/rescale.c
./External/nlopt/util/rescale.cpp
./External/nlopt/util/soboldata.h
./External/nlopt/util/sobolseq.c
./External/nlopt/util/sobolseq.cpp
./External/nlopt/util/stop.c
./External/nlopt/util/stop.cpp
./External/nlopt/util/timer.c
./External/nlopt/util/timer.cpp
./src/limix/types.h
./src/limix/LMM/kronecker_lmm.cpp
./src/limix/LMM/kronecker_lmm.h
./src/limix/LMM/lmm.cpp
./src/limix/LMM/lmm.h
./src/limix/LMM_forest/SplittingCore.h
./src/limix/LMM_forest/lmm_forest.cpp
./src/limix/LMM_forest/lmm_forest.h
./src/limix/covar/combinators.cpp
./src/limix/covar/combinators.h
./src/limix/covar/covariance.cpp
./src/limix/covar/covariance.h
./src/limix/covar/dist.cpp
./src/limix/covar/dist.h
./src/limix/covar/freeform.cpp
./src/limix/covar/freeform.h
./src/limix/covar/linear.cpp
./src/limix/covar/linear.h
./src/limix/covar/se.cpp
./src/limix/covar/se.h
./src/limix/gp/gp_Sum.cpp
./src/limix/gp/gp_Sum.h
./src/limix/gp/gp_base.cpp
./src/limix/gp/gp_base.h
./src/limix/gp/gp_kronSum.cpp
./src/limix/gp/gp_kronSum.h
./src/limix/gp/gp_kronecker.cpp
./src/limix/gp/gp_kronecker.h
./src/limix/gp/gp_opt.cpp
./src/limix/gp/gp_opt.h
./src/limix/io/dataframe.cpp
./src/limix/io/dataframe.h
./src/limix/io/genotype.cpp
./src/limix/io/genotype.h
./src/limix/io/split.cpp
./src/limix/io/split.h
./src/limix/likelihood/likelihood.cpp
./src/limix/likelihood/likelihood.h
./src/limix/mean/ADataTerm.cpp
./src/limix/mean/ADataTerm.h
./src/limix/mean/CData.cpp
./src/limix/mean/CData.h
./src/limix/mean/CKroneckerMean.cpp
./src/limix/mean/CKroneckerMean.h
./src/limix/mean/CLinearMean.cpp
./src/limix/mean/CLinearMean.h
./src/limix/mean/CSumLinear.cpp
./src/limix/mean/CSumLinear.h
./src/limix/modules/CVarianceDecomposition.cpp
./src/limix/modules/CVarianceDecomposition.h
./src/limix/utils/beta.cpp
./src/limix/utils/beta.h
./src/limix/utils/brentc.cpp
./src/limix/utils/brentc.h
./src/limix/utils/cache.cpp
./src/limix/utils/cache.h
./src/limix/utils/fisherf.cpp
./src/limix/utils/fisherf.h
./src/limix/utils/gamma.cpp
./src/limix/utils/gamma.h
./src/limix/utils/mathfunctions.cpp
./src/limix/utils/mathfunctions.h
./src/limix/utils/matrix_helper.cpp
./src/limix/utils/matrix_helper.h
limix.egg-info/PKG-INFO
limix.egg-info/SOURCES.txt
limix.egg-info/dependency_links.txt
limix.egg-info/requires.txt
limix.egg-info/top_level.txt
src/interfaces/python/limix_wrap.cpp
src/interfaces/python/bin/limix_runner
src/interfaces/python/limix/__init__.py
src/interfaces/python/limix/__init__.pyc
src/interfaces/python/limix/core.py
src/interfaces/python/limix/python_modules.pyproj
src/interfaces/python/limix/archive/FastVDMM.py
src/interfaces/python/limix/archive/data_deprecated.py
src/interfaces/python/limix/archive/qtl_old.py
src/interfaces/python/limix/archive/util.py
src/interfaces/python/limix/archive/varianceDecompositionOld.py
src/interfaces/python/limix/io/__init__.py
src/interfaces/python/limix/io/conversion.py
src/interfaces/python/limix/io/data.py
src/interfaces/python/limix/io/data_util.py
src/interfaces/python/limix/io/genotype_reader.py
src/interfaces/python/limix/io/output_writer.py
src/interfaces/python/limix/io/phenotype_reader.py
src/interfaces/python/limix/io/plink.py
src/interfaces/python/limix/modules/BLUP.py
src/interfaces/python/limix/modules/__init__.py
src/interfaces/python/limix/modules/lmm_fast.py
src/interfaces/python/limix/modules/lmm_forest.py
src/interfaces/python/limix/modules/lmmlasso.py
src/interfaces/python/limix/modules/mixedForestUtils.py
src/interfaces/python/limix/modules/multiPanama.py
src/interfaces/python/limix/modules/panama.py
src/interfaces/python/limix/modules/parMixedForest.py
src/interfaces/python/limix/modules/pySplittingCore.py
src/interfaces/python/limix/modules/qtl.py
src/interfaces/python/limix/modules/varDecompSet.py
src/interfaces/python/limix/modules/varianceDecomposition.py
src/interfaces/python/limix/stats/__init__.py
src/interfaces/python/limix/stats/fdr.py
src/interfaces/python/limix/stats/geno_summary.py
src/interfaces/python/limix/stats/pca.py
src/interfaces/python/limix/stats/power.py
src/interfaces/python/limix/utils/__init__.py
src/interfaces/python/limix/utils/fastlmm.py
src/interfaces/python/limix/utils/plot.py
src/interfaces/python/limix/utils/preprocess.py