Metadata-Version: 1.1
Name: RNFtools
Version: 0.2.1
Summary: A package for Read Naming Format (RNF).
Home-page: http://github.com/karel-brinda/rnftools
Author: Karel Brinda
Author-email: karel.brinda@gmail.com
License: MIT
Description: RNFtools
        ========
        
        .. image:: https://travis-ci.org/karel-brinda/rnftools.svg?branch=master
        	:target: https://travis-ci.org/karel-brinda/rnftools
        
        .. image:: https://readthedocs.org/projects/rnftools/badge/?version=latest
        	:target: http://rnftools.rtfd.org
        
        
        Read Naming Format is a generic format for assigning
        read names with encoded information about original positions. RNFtools is an associated
        software package which can:
        
        * simulate RNF-compliant reads using a wide class of integrated read simulators (Art, DwgSim, Mason, WgSim, etc.);
        * evaluate mappers using RNF reads;
        * convert non-RNF simulated reads to RNF (e.g., from SAM format);
        * transform genomic coordinates of RNF reads between different coordinate systems (using chain LiftOver format).
        
        Links
        -----
        
        **Web of the project:** http://karel-brinda.github.io/rnftools/
        
        **RNF specification:** http://karel-brinda.github.io/rnf-spec/
        
        **Documentation:** http://rnftools.rtfd.org
        
        **Installation:** http://rnftools.readthedocs.org/en/latest/tutorial/00_installation.html
        
        **Examples of usage:** http://github.com/karel-brinda/rnftools/tree/master/examples/tutorial
        
        **Publication:** http://dx.doi.org/10.1093/bioinformatics/btv524 (preprint: http://arxiv.org/abs/1504.00556)
        
        
Keywords: Bioinformatics,Computational Biology,Next-Generation Sequencing,Read Simulation,Mappers Evaluation,Snakemake
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: Unix
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
