LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/conf.py
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/pipelime.augmentations.rst
docs/pipelime.cli.conversions.rst
docs/pipelime.cli.datasets.rst
docs/pipelime.cli.h5.rst
docs/pipelime.cli.rst
docs/pipelime.cli.underfolder.rst
docs/pipelime.cli.workflow.rst
docs/pipelime.filesystem.rst
docs/pipelime.h5.rst
docs/pipelime.rst
docs/pipelime.sequences.readers.rst
docs/pipelime.sequences.rst
docs/pipelime.sequences.writers.rst
docs/pipelime.tools.rst
docs/readme.rst
docs/usage.rst
docs/images/naming.png
docs/images/underfolder.png
pipelime/__init__.py
pipelime/cli.py
pipelime/pipelime.py
pipelime.egg-info/PKG-INFO
pipelime.egg-info/SOURCES.txt
pipelime.egg-info/dependency_links.txt
pipelime.egg-info/entry_points.txt
pipelime.egg-info/not-zip-safe
pipelime.egg-info/requires.txt
pipelime.egg-info/top_level.txt
pipelime/augmentations/__init__.py
pipelime/augmentations/factory.py
pipelime/augmentations/transforms.py
pipelime/cli/__init__.py
pipelime/cli/main.py
pipelime/cli/summary.py
pipelime/cli/conversions/__init__.py
pipelime/cli/conversions/conversions.py
pipelime/cli/conversions/h5_to_underfolder.py
pipelime/cli/conversions/underfolder_to_h5.py
pipelime/cli/datasets/__init__.py
pipelime/cli/datasets/datasets.py
pipelime/cli/datasets/generate_toy_dataset.py
pipelime/cli/h5/__init__.py
pipelime/cli/h5/h5.py
pipelime/cli/h5/operations.py
pipelime/cli/underfolder/__init__.py
pipelime/cli/underfolder/operations.py
pipelime/cli/underfolder/underfolder.py
pipelime/cli/workflow/__init__.py
pipelime/cli/workflow/click2cwl.py
pipelime/cli/workflow/delete_nodes.py
pipelime/cli/workflow/init_workflow.py
pipelime/cli/workflow/list_nodes.py
pipelime/cli/workflow/run_workflow.py
pipelime/cli/workflow/show_graph.py
pipelime/cli/workflow/update_nodes.py
pipelime/cli/workflow/workflow.py
pipelime/filesystem/__init__.py
pipelime/filesystem/toolkit.py
pipelime/h5/__init__.py
pipelime/h5/toolkit.py
pipelime/sequences/__init__.py
pipelime/sequences/operations.py
pipelime/sequences/pipes.py
pipelime/sequences/samples.py
pipelime/sequences/stages.py
pipelime/sequences/validation.py
pipelime/sequences/readers/__init__.py
pipelime/sequences/readers/base.py
pipelime/sequences/readers/filesystem.py
pipelime/sequences/readers/h5.py
pipelime/sequences/readers/summary.py
pipelime/sequences/writers/__init__.py
pipelime/sequences/writers/base.py
pipelime/sequences/writers/filesystem.py
pipelime/sequences/writers/h5.py
pipelime/tools/__init__.py
pipelime/tools/bytes.py
pipelime/tools/idgenerators.py
pipelime/tools/toydataset.py
tests/__init__.py
tests/conftest.py
tests/test_pipelime.py
tests/pipelime/__init__.py
tests/pipelime/augmentations/__init__.py
tests/pipelime/augmentations/conftest.py
tests/pipelime/augmentations/test_factory.py
tests/pipelime/cli/__init__.py
tests/pipelime/cli/test_underfolder.py
tests/pipelime/sequences/__init__.py
tests/pipelime/sequences/conftest.py
tests/pipelime/sequences/test_operations.py
tests/pipelime/sequences/test_pipes.py
tests/pipelime/sequences/test_samples.py
tests/pipelime/sequences/test_sequence.py
tests/pipelime/sequences/test_stages.py
tests/pipelime/sequences/test_validation.py
tests/pipelime/sequences/io/__init__.py
tests/pipelime/sequences/io/test_filesystem.py
tests/pipelime/sequences/io/test_h5.py
tests/pipelime/sequences/io/test_mixed.py
tests/pipelime/sequences/io/test_summary.py
tests/pipelime/workflow/tools/test_cwl_template.py
tests/sample_data/augmentations/full_custom_augmentations.yml
tests/sample_data/augmentations/full_custom_augmentations_bboxes_keypoints.yml
tests/sample_data/datasets/underfolder_minimnist.h5
tests/sample_data/datasets/underfolder_minimnist/cfg.yml
tests/sample_data/datasets/underfolder_minimnist/numbers.txt
tests/sample_data/datasets/underfolder_minimnist/pose.txt
tests/sample_data/datasets/underfolder_minimnist/data/000000_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000000_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000000_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000000_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000000_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000000_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000000_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000001_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000001_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000001_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000001_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000001_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000001_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000001_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000002_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000002_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000002_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000002_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000002_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000002_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000002_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000003_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000003_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000003_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000003_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000003_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000003_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000003_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000004_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000004_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000004_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000004_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000004_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000004_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000004_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000005_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000005_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000005_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000005_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000005_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000005_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000005_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000006_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000006_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000006_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000006_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000006_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000006_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000006_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000007_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000007_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000007_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000007_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000007_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000007_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000007_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000008_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000008_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000008_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000008_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000008_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000008_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000008_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000009_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000009_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000009_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000009_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000009_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000009_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000009_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000010_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000010_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000010_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000010_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000010_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000010_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000010_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000011_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000011_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000011_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000011_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000011_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000011_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000011_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000012_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000012_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000012_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000012_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000012_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000012_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000012_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000013_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000013_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000013_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000013_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000013_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000013_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000013_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000014_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000014_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000014_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000014_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000014_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000014_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000014_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000015_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000015_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000015_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000015_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000015_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000015_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000015_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000016_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000016_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000016_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000016_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000016_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000016_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000016_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000017_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000017_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000017_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000017_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000017_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000017_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000017_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000018_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000018_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000018_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000018_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000018_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000018_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000018_points.txt
tests/sample_data/datasets/underfolder_minimnist/data/000019_image.jpg
tests/sample_data/datasets/underfolder_minimnist/data/000019_image_mask.png
tests/sample_data/datasets/underfolder_minimnist/data/000019_image_maskinv.png
tests/sample_data/datasets/underfolder_minimnist/data/000019_label.txt
tests/sample_data/datasets/underfolder_minimnist/data/000019_metadata.json
tests/sample_data/datasets/underfolder_minimnist/data/000019_metadatay.yml
tests/sample_data/datasets/underfolder_minimnist/data/000019_points.txt
tests/sample_data/datasets/underfolder_minimnist_schemas/bad.schema
tests/sample_data/datasets/underfolder_minimnist_schemas/deep.schema
tests/sample_data/datasets/underfolder_minimnist_schemas/invalid.schema
tests/sample_data/datasets/underfolder_minimnist_schemas/simple.schema